Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq4296 125 5e-24 >seq4296 Length=1824142 Score = 125 bits (138), Expect = 5e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101752 AGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCC 101811 || |||||||||||||||| |||| || || ||||| || ||||||||||||||||| Sbjct 1063278 AGCGACATGAGCAATCATGTAAGTCAACAGGGAATACGATGCTATGTTAAATGGCACTCC 1063219 Query 101812 TAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATA 101871 || |||||||| || |||||| || ||||| || | | || | ||||| Sbjct 1063218 CAAACCCATATCTGCACTTCTTTGGTAAAGTTGCGCAGATAATTCCCCGTTGTTTACATA 1063159 Query 101872 AAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCA 101931 |||||| || |||||||| || ||||| |||| || |||||||| || |||||| Sbjct 1063158 AAATTGTACAAAAACATGACATGGTGGCAATGCCATCTTTGGAATGTCAGACGGATTCCA 1063099 Query 101932 AGCACACATTAACATCCTTCTATC 101955 |||| |||||| || | ||| || Sbjct 1063098 AGCAGACATTATAATACGTCTGTC 1063075 Score = 111 bits (122), Expect = 1e-19 Identities = 166/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||||||||| || || || |||| ||| ||||| ||||| ||||| || | ||| |||| Sbjct 1062886 CTTTATATTCAGCACCAAAGTGCCGCCATTGAAAGCCATAAACAGGCCCCAAATCACCTT 1062827 Query 102093 CATCTCTGTCATAAAAACC--AAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCA 102150 | ||||| ||| || || ||| ||| ||||| | || || | ||| ||||||| Sbjct 1062826 CCTCTCTATCAGTGAAGCCGCAAGA--ATCCAAAAAAGCTCGTGAACTATTTTCATCCCA 1062769 Query 102151 AATGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAA 102210 || || || || ||| || | |||| | || |||||| ||||||||||||| Sbjct 1062768 GATATGAACACCCTTATCTGTTAAGTGTTTGGCATTTGTTGATCCTTTGATAAACCACAA 1062709 Query 102211 CAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAA 102264 || || ||||| || ||| ||| ||||| | ||||| || | | |||||| Sbjct 1062708 AAGCTCCTCAACCACTGCTCGCCAGAATACCCGTTTAGTTGTCAGCAATGGAAA 1062655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361230749230895