Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3895 104 3e-17 seq4254 98.7 1e-15 >seq3895 Length=328041 Score = 104 bits (114), Expect = 3e-17 Identities = 177/257 (69%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 54396 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 54455 |||| | || ||||| || ||| |||| | ||||| ||||| || || ||||| | Sbjct 4873 GAAATTACCTGGACATCTGCTGATTGTTAGTACAGGCATTGAATAACGTTGGTGAAGCAT 4814 Query 54456 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATT 54515 | ||||| || | | || | | || || || || || ||| ||| ||||| | Sbjct 4813 GTGTAAAGTATCGTCCTGATAAAAAGTTATATGTTTCTATGGCTTTGTCAATATCATTCT 4754 Query 54516 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 54575 ||||| || || || || | ||| ||||| ||||||||||| || || || || | Sbjct 4753 CGTGAATACCGACAGCAACTCTCATCAACATATGCTGAGGTCTCTCCACAATTTTACCAT 4694 Query 54576 TTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 54635 | |||||||| || ||| | |||| | |||||||| || | |||||| || ||||| Sbjct 4693 TAATTTTCAGTAAATAGCTTCTTTCAAGTGTTTTAAAGCCGATATAGTTATAACTAAAGT 4634 Query 54636 CTCGTTCGTAAATAATA 54652 |||| || || || ||| Sbjct 4633 CTCGATCATATATTATA 4617 Score = 104 bits (114), Expect = 3e-17 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 53939 GTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA 53998 ||||||||| || ||| ||||| |||||||||| |||| ||||| ||||| |||| Sbjct 5488 GTATACAATTCTTTAAATTCGTCGCCCCAAACATCAGCCAAGCCAGGGGATTCAGACGGA 5429 Query 53999 CACATCAACGACCAC-TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 54057 ||||| || |||| |||| |||| | ||| |||| |||||| ||||| || ||||| Sbjct 5428 CACATTAAGCTCCACATCTCA-TCATTATACACACGTTCCATAAAAAGATCTGGTATCCA 5370 Query 54058 AAGAGCTATAAATAGATCTCT 54078 |||| | |||||||||||| Sbjct 5369 AAGACCATAAAATAGATCTCT 5349 Score = 86.0 bits (94), Expect = 7e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 53093 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 53152 || || | || |||||| ||| | |||||| ||| || | ||||||||| | | Sbjct 6616 ATGTCTTTATCCCATAAACCTCTGGCAGTTAAATCTCGTAGTAAATGCGGATTGATGATG 6557 Query 53153 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 53212 |||||||||||| ||||| | || | || |||||||| ||||| ||||| | ||| Sbjct 6556 ACAAATTCTCCAGATAATACGCGCCTTATATAGATATTACTCGTATATGGTTCGATAGAT 6497 Query 53213 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 53259 || || || || || || || || || || || || ||||| ||||| Sbjct 6496 TCGTTGTTCCCTAATATCTGTGCCGTCGAAGCCGTTGGCATTGGTGC 6450 >seq4254 Length=3256360 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/199 (71%), Gaps = 5/199 (3%) Strand=Plus/Plus Query 24418 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATC 24477 ||||| |||||| ||||||||||| || || ||||| ||||| || || || ||||| | Sbjct 698805 AAAGA--ATACATCTCCGAATGAATATTCTCTATGGCGATTTGGAAACCATAAAAACAGC 698862 Query 24478 TAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTC 24537 || |||| ||| | ||| || || ||||| || |||||||||||| || || | Sbjct 698863 GTGCTTCGGCAATTTTTACCTCCTGACTAAATCTCTCAATTAAATTTTCATTAACAATAC 698922 Query 24538 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA 24597 | || || || ||||| ||||| ||||| ||||| ||| | ||||| | ||| Sbjct 698923 CATCGGAAGCAGCGAAAAATGCCAAGACATGAGAAATAAAGTATCTCTCGTCGGAATTTA 698982 Query 24598 G---TTTATTCCAATCATT 24613 | || || |||||| || Sbjct 698983 GCTTTTCATCCCAATCTTT 699001 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692 |||||||| | |||||||| || || | |||||||||||||| | ||| || ||| || Sbjct 699176 ACTTCTTCTATGGTCCAAAAGGAAGCTACAGCCTTTTTATACATTTCCCAAATATCAGGA 699235 Query 24693 TATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATTGGTTCCA 24747 ||||| || ||||| || ||||| | ||||||| ||| | || | |||||||| Sbjct 699236 TATTGTATAGGAAAGATTACAAAGCGATTTGGACTTTCTTGGAGTAGTGGTTCCA 699290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593687127039600