Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4196 141 1e-28 seq4241 118 1e-21 seq4254 87.8 2e-12 >seq4196 Length=1840941 Score = 141 bits (156), Expect = 1e-28 Identities = 144/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || |||||||| |||||||||||| |||| || || ||| || Sbjct 1068583 ATGCAAATCTTTGTGAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTAGAGGCCTCC 1068642 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| |||| | || |||| || || ||||| || || |||| ||| Sbjct 1068643 GATACCATTGAAAATGTCAAAGCCAAGATTCAAGATAAGGAGGGAATTCCACCGGATCAG 1068702 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||||||||||| ||| |||||||||||||| || | ||||| ||| || ||||| Sbjct 1068703 CAACGACTCATCTTCGCTGGCAAACAGCTGGAGGATGGACGCACTCTCTCAGATTACAAT 1068762 Query 40870 ATCCAGAA 40877 |||||||| Sbjct 1068763 ATCCAGAA 1068770 >seq4241 Length=1709304 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || ||||| || |||||||||||| | || || || || | Sbjct 639369 AATGCAGATCTTCGTCAAGACACTCACAGGAAAAACCATCACCCTTGAAGTTGAGGCTTC 639310 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | | | ||||| |||| | ||||||| |||||||||||||| || | || | Sbjct 639309 GGATACCATAGAAAACG-TCAAAGCCAAAATTCAGGACAAAGAGGGCATTCCACCTGATC 639251 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | || || | |||| || |||||||||||||| |||| | || || ||| |||| Sbjct 639250 AACAGCGTTTAATCTTTGCTGGCAAACAGCTGGAAGACGGCAGAACTCTTTCCGATTACA 639191 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||| || ||||| |||| || || |||| || || Sbjct 639190 ACATTCAAAAGGAATCCACACTTCACTTAGTTTTACG 639154 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| || || || ||||| ||||| | || || ||||| | Sbjct 640385 ATGCAAATCTTTGTGAAAACTCTTACTGGAAAAACAATCACTCTTGAGGTGGAAGCTTCT 640326 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | || | ||||||| |||||||| || || ||| | || ||| Sbjct 640325 GACACAATAGAAAATGTAAAAGCTAAAATTCAGGACAAAGAAGGTATTCCCCCAGATCAG 640266 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| || || || ||| |||| || | | || || ||||||||| Sbjct 640265 CAACGTCTGATCTTTGCTGGAAAGCAGTTGGAAGATGGCAGAACTCTTTCTGACTACAAC 640206 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||| || | || || ||| |||| |||| Sbjct 640205 ATCCAGAAAGAATCAACACTCCATTTAGTACTGCG 640171 >seq4254 Length=3256360 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 || || || || || || || || | || ||| || |||||||| || ||||||||| Sbjct 698494 GTTGCTTTTGCAGCGGTTGAAGGTATTTTTTTTAGCGGTAGTTTCGCTGCGATATTTTGG 698435 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTC 117156 | |||||||| || ||||||| ||||| ||||||||||| || |||||||| Sbjct 698434 TTGAAGAAACGAGGAATCATGCCTGGCCTTACTTTCAGCAATGAACTCATCTC 698382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515189285085200