Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq4296 107 1e-18 >seq4296 Length=1824142 Score = 107 bits (118), Expect = 1e-18 Identities = 166/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 97397 CTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTT 97456 ||| |||||| || ||||| |||| |||||| || ||||||||||| || | || |||| Sbjct 1062886 CTTTATATTCAGCACCAAAGTGCCGCCATTGAAAGCCATAAACAGGCCCCAAATCACCTT 1062827 Query 97457 CTTCTCTATCACAGAAAC--CAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCA 97514 | ||||||||| ||| | |||| ||| ||| | | | || | |||| ||||||| Sbjct 1062826 CCTCTCTATCAGTGAAGCCGCAAG--AATCCAAAAAAGCTCGTGAACTATTTTCATCCCA 1062769 Query 97515 AATGTGCACACCAGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAA 97574 || || ||||| ||| | | |||| | || |||||| ||||||||||||| Sbjct 1062768 GATATGAACACCCTTATCTGTTAAGTGTTTGGCATTTGTTGATCCTTTGATAAACCACAA 1062709 Query 97575 CAATTCTTCCACAACACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAAA 97629 | || || || || ||| ||| ||||| | |||||||| | | |||||| Sbjct 1062708 AAGCTCCTCAACCACTGCTCGCCAGAATACCCGTTTAGTTGTCAGCAATGGAAAA 1062654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346764368232650