Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq4164 176 7e-39 seq4296 127 3e-24 seq4241 118 2e-21 seq4196 91.5 2e-13 seq4247 89.7 8e-13 >seq4164 Length=697328 Score = 176 bits (194), Expect = 7e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| ||| ||||| || || ||||| || ||| | || | |||||| Sbjct 358333 ATGCAGATCTTTGTAAGAACACTCACTGGTAAAACGATCACTCTGGAAGTCGAAGCATCA 358274 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | ||| |||||||||||| || |||||||| ||||| |||||| Sbjct 358273 GACACAATTGAAAATGTCAAAGCGAAAATTCAAGACAAGGAAGGTATTCCACCAGATCAA 358214 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | ||||| || ||||||||| | || || | ||||| ||| ||||| ||| Sbjct 358213 CAGAGATTGATTTTCGCCGGAAAACAACTTGAAGACGGCCGAACGTTATCCGATTACAAT 358154 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||||||||||||||||||| | ||| | || |||||||| Sbjct 358153 ATACAAAAAGAATCAACTTTGCATTTGGTTCTTCGTCTCCGTGGTGGTAT 358104 Score = 122 bits (134), Expect = 1e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| ||||||| || || || || | || |||||||| Sbjct 358105 ATGCAGATCTTCGTCAAGACTTTAACAGGAAAGACCATCACATTGGAAGTTGAAGCATCG 358046 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | ||| |||||||| || |||||||| || || |||||||| Sbjct 358045 GACACAATTGAGAATGTCAAAGCTAAAATTCAGGACAAAGAAGGAATTCCTCCTGATCAG 357986 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | ||||| || ||||||||| | ||||| |||| || || ||||||||| Sbjct 357985 CAGAGATTGATTTTCGCTGGAAAACAACTCGAGGACGGTCGCACTTTGTCCGATTATAAT 357926 Query 124719 ATTCAAAAAGAATCAAC 124735 |||||||| ||||| || Sbjct 357925 ATTCAAAAGGAATCTAC 357909 Score = 113 bits (124), Expect = 7e-20 Identities = 127/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | ||| |||||||| || || ||||| || || || ||||| Sbjct 358501 GACACAATTGAAAATGTCAAAGCTAAAATTCAGGACAAGGAAGGAATCCCTCCGGATCAG 358442 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | |||||||| ||||||||| | ||||| |||| ||| | || || ||| Sbjct 358441 CAGAGGTTAATTTTTGCCGGAAAACAACTCGAGGACGGTCGCACACTCTCCGACTACAAT 358382 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| ||||| || || |||||||||||||| | | || |||||||| Sbjct 358381 ATTCAGAAAGAGTCGACCTTGCATTTGGTTTTGAGGCTTCGCGGTGGTAT 358332 Score = 98.7 bits (108), Expect = 1e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || || |||| || ||||| || ||| | || | || || Sbjct 358968 AATGCAGATTTTTGTCAAAACCTTAACGGGAAAAACCATCACTTTGGAAGTAGAGGCTTC 358909 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| | ||| |||||||||||| || |||||||| ||||| ||||| Sbjct 358908 AGATACAATTGAAAATGTCAAAGCGAAAATTCAAGACAAGGAAGGTATCCCACCAGATCA 358849 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGAT 124694 |||||| | || || || ||||||||| | || ||| Sbjct 358848 GCAAAGGTTGATCTTCGCTGGAAAACAACTTGAAGAT 358812 >seq4296 Length=1824142 Score = 127 bits (140), Expect = 3e-24 Identities = 181/252 (72%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 205708 GTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAA 205767 || |||| ||| | |||||| |||||| ||||||||| || ||||||||||| |||||| Sbjct 1062905 GTGTAATCTGTGTGCATATCTTTATATTCAGCACCAAAGTGCCGCCATTGAAAGCCATAA 1062846 Query 205768 ACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttatatattttaat 205827 || || || ||||||||||| | ||||||| | || || | | | | | | | Sbjct 1062845 ACAGGCCCCAAATCACCTTCCTCTCTATCAGTGAAGCCGCAAGAATCCAAAAAAGCTCGT 1062786 Query 205828 gatccattttcatcccaaatatggattcctttattttttaGAATATTT-GTATTAGTTGA 205886 || | |||||||||||| ||||| | || |||| | ||| | | ||| | ||| ||||| Sbjct 1062785 GAACTATTTTCATCCCAGATATGAACACCCTTATCTGTTA-AGTGTTTGGCATTTGTTGA 1062727 Query 205887 TCCAGATATAAACCATAATAATTCTTCAACAATTCCTCTCCAAAACATTGATTTTGTTGT 205946 ||| |||||||| || | || ||||| | | ||| ||| || | ||| ||||| Sbjct 1062726 TCCTTTGATAAACCACAAAAGCTCCTCAACCACTGCTCGCCAGAATACCCGTTTAGTTGT 1062667 Query 205947 AAATAATGGAAA 205958 | |||||||| Sbjct 1062666 CAGCAATGGAAA 1062655 >seq4241 Length=1709304 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || || || || ||||| || ||| | ||| | ||||| | Sbjct 640385 ATGCAAATCTTTGTGAAAACTCTTACTGGAAAAACAATCACTCTTGAGGTGGAAGCTTCT 640326 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| ||| ||||| |||||||| || ||||||||||| || || ||||| Sbjct 640325 GACACAATAGAAAATGTAAAAGCTAAAATTCAGGACAAAGAAGGTATTCCCCCAGATCAG 640266 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || || ||||| ||||| || || || ||| | |||| | || || || Sbjct 640265 CAACGTCTGATCTTTGCTGGAAAGCAGTTGGAAGATGGCAGAACTCTTTCTGACTACAAC 640206 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||||||||| | ||||| || | ||| | ||||| || || Sbjct 640205 ATCCAGAAAGAATCAACACTCCATTTAGTACTGCGTCTTCGAGGAGGAAT 640156 Score = 93.3 bits (102), Expect = 6e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | |||||||| ||||| ||||| || || | || |||| || Sbjct 639369 AATGCAGATCTTCGTCAAGACACTCACAGGAAAAACCATCACCCTTGAAGTTGAGGCTTC 639310 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || || | ||| |||||||| || ||||| || || ||||||||||| Sbjct 639309 GGATACCATAGAAAACGTCAAAGCCAAAATTCAGGACAAAGAGGGCATTCCACCTGATCA 639250 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | || ||||| || ||||| | || || | |||| | ||||| || Sbjct 639249 ACAGCGTTTAATCTTTGCTGGCAAACAGCTGGAAGACGGCAGAACTCTTTCCGATTACAA 639190 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 |||||||| ||||| || | || || |||||||| | || || ||| Sbjct 639189 CATTCAAAAGGAATCCACACTTCACTTAGTTTTACGACTTCGTGGAGGT 639141 >seq4196 Length=1840941 Score = 91.5 bits (100), Expect = 2e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || |||||||| ||| | ||||| || || || ||||| || || | ||| | || || Sbjct 1068580 ACCATGCAAATCTTTGTGAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTAGAGGCC 1068639 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 ||||| ||| ||| | ||| || ||||||||||| || || || ||||| ||| Sbjct 1068640 TCCGATACCATTGAAAATGTCAAAGCCAAGATTCAAGATAAGGAGGGAATTCCACCGGAT 1068699 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || ||| | || || || || || ||||| | |||||| | || || | |||||| Sbjct 1068700 CAGCAACGACTCATCTTCGCTGGCAAACAGCTGGAGGATGGACGCACTCTCTCAGATTAC 1068759 Query 124716 AATATTCAAAAAG 124728 ||||| || |||| Sbjct 1068760 AATATCCAGAAAG 1068772 >seq4247 Length=3167485 Score = 89.7 bits (98), Expect = 8e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 124640 AGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCG 124699 ||| || || || |||||||||||| | |||||||| || || ||||| || ||| | | Sbjct 1136494 AGGAATTCCGCCAGATCAACAAAGGTTAATTTTTGCTGGCAAGCAATTGGAAGATGGCAG 1136553 Query 124700 AACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACG 124759 || | ||| || || ||||| |||||||| || || ||||| ||||| || || || Sbjct 1136554 GACTCTGTCAGACTACAACATTCAGAAAGAATCTACGTTACATTTAGTTTTGCGCTTGCG 1136613 Query 124760 AGGTGGT 124766 ||||||| Sbjct 1136614 AGGTGGT 1136620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755412136336000