Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq4241 118 9e-22 seq4164 107 2e-18 >seq4241 Length=1709304 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 |||||| || | || || || ||||| | ||| || || |||||||||||||||||| Sbjct 639141 ACCTCCACGAAGTCGTAAAACTAAGTGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGA 639200 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||| | || || |||||||| ||||| |||| | |||||| ||||| || || Sbjct 639201 AAGAGTTCTGCCGTCTTCCAGCTGTTTGCCAGCAAAGATTAAACGCTGTTGATCAGGTGG 639260 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 |||||||| ||||| |||||| ||| || | ||| | ||| |||| ||| || Sbjct 639261 AATGCCCTCTTTGTCCTGAATTTTGGCTTTGACGTTTTCTATGGTATCCGAAGCCTCAAC 639320 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||||| || || || || || || || |||||||| Sbjct 639321 TTCAAGGGTGATGGTTTTTCCTGTGAGTGTCTTGACGAAGATCTGCAT 639368 Score = 82.4 bits (90), Expect = 7e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 118613 ACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGAC 118672 ||||||||||||||| || ||||| || |||||| ||| || ||| || | ||| | Sbjct 640032 ACGCTGCTGATCGGGTGGAATGCCTTCTTTGTCTTGAATCTTAGCTTTTACATTTTCTAT 640091 Query 118673 GGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAA 118731 ||||| | ||| ||||| |||| || | |||||||| || ||||| || ||||| | Sbjct 640092 AGTGTCTGAAGCT-TCGACTTCGAGAGTGATGGTTTTGCCTGTGAGAGTCTTCACAAAGA 640150 Query 118732 TCTGCAT 118738 ||||||| Sbjct 640151 TCTGCAT 640157 >seq4164 Length=697328 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || |||||||| | ||||| |||| || || || || ||||| |||||||| | Sbjct 358969 CCACCACGTAATCTGAGAACCAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCTGAC 359028 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||| || ||||| ||||||||| | || | ||||||||| || || || Sbjct 359029 AAGGTGCGTCCATCTTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTGGG 359088 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||| ||||| || || ||| || || | |||| || || | ||| || Sbjct 359089 ATGCCTTCCTTATCCTGGATCTTTGCCTTTACATTCTCGATAGTATCAGAAGCCTCAACT 359148 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 |||| || | ||||| ||||| | || || || ||||||||||||| Sbjct 359149 TCGAGAGTTATGGTTTTCCCGGTTAACGTCTTCACGAAAATCTGCATGG 359197 Score = 105 bits (116), Expect = 6e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||| | |||||| || |||||||| || |||||| || |||||| |||||||| || Sbjct 357902 GTGAAGTGTAGATTCCTTTTGAATATTATAATCGGACAAAGTGCGACCGTCCTCGAGTTG 357961 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 |||||||||| | || | | ||||||||| ||||| || || || ||||| |||||| Sbjct 357962 TTTTCCAGCGAAAATCAATCTCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATTTT 358021 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGG 118713 ||| || | || | ||||||| |||| || || || | || | || || || | Sbjct 358022 AGCTTTGACATTCTCAATTGTGTCCGATGCT-TCAACTTCCAATGTGATGGTCTTTCCTG 358080 Query 118714 TCAGAGTTTTTACAAAAATCTGCAT 118738 | | ||| || || || |||||||| Sbjct 358081 TTAAAGTCTTGACGAAGATCTGCAT 358105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433805840454340