Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq3884 104 3e-17 seq4196 102 9e-17 seq3778 98.7 1e-15 seq4142 96.9 4e-15 seq4164 93.3 5e-14 seq4080 91.5 2e-13 seq4241 87.8 2e-12 >seq3884 Length=1137270 Score = 104 bits (114), Expect = 3e-17 Identities = 73/82 (89%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| || ||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 923887 AAAAATGATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 923946 Query 60116 CTCACCACTATACTACCGAGGA 60137 || ||||||||||||||||||| Sbjct 923947 CTAACCACTATACTACCGAGGA 923968 >seq4196 Length=1840941 Score = 102 bits (112), Expect = 9e-17 Identities = 145/200 (73%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 42986 TGTGCTCTCCTTT-TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTAC 43044 ||| | | ||||| || ||||||||||| | ||||| || | || || ||||| || | Sbjct 1068781 TGTTCGCACCTTTCTGGATATTGTAATCTGAGAGAGTGCGTCCATCCTCCAGCTGTTTGC 1068722 Query 43045 CAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-T 43103 ||||||| |||||||| ||||| || | || | | |||||| | | ||| | || | | Sbjct 1068721 CAGCGAAGATGAGTCGTTGCTGATCCGGTGGAATTCCCTCCTTAT-CTTGAATCTTGGCT 1068663 Query 43104 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGC 43163 |||| | | | || ||| | || || |||| ||||||||||| ||||| || Sbjct 1068662 TTGACATTTTCAATGGTATCGGAGGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGG 1068603 Query 43164 GTCTTTACAAAGATTTGCAT 43183 ||||| |||||||||||||| Sbjct 1068602 GTCTTCACAAAGATTTGCAT 1068583 >seq3778 Length=435428 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 || ||||| ||||| || | ||||||||||||| ||||||||||||||||||||| | Sbjct 425695 ATAAAAAAAGGTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 425636 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||| |||||||||||| |||||| Sbjct 425635 TACTAACCACTATACTATCGAGGA 425612 >seq4142 Length=510391 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 503312 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 503253 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 503252 ATACTATCGAGGA 503240 >seq4164 Length=697328 Score = 93.3 bits (102), Expect = 5e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | ||| ||||| |||||||||||||| | || || || | || || Sbjct 358987 ACCAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCTGACAAGGTGCGTCCATCTTCA 359046 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| |||||||| || | ||||||||||| | || | || ||||| ||| | Sbjct 359047 AGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGG 359106 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || ||| || | || | | || || | || || |||| || |||||||| Sbjct 359107 ATCTTTGCCTTTACATTCTCGATAGTATCAGAAGCCTCAACTTCGAGAGTTATGGTTTTC 359166 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||| |||||| || || || ||||| Sbjct 359167 CCGGTTAACGTCTTCACGAAAATCTGCAT 359195 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||||||||| ||||| | || ||| || |||| || || || || |||||||| Sbjct 357915 TCCTTTTGAATATTATAATCGGACAAAGTGCGACCGTCCTCGAGTTGTTTTCCAGCGAAA 357974 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || | || |||||| || | || | | || |||||| ||| |||| | ||||| | Sbjct 357975 ATCAATCTCTGCTGATCAGGAGGAATTCCTTCTTTGTCC-TGAATTTTAGCTTTGACATT 358033 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||| | ||| || || | |||||||| || || |||| ||||| || Sbjct 358034 CTCAATTGTGTCCGATGCTTCAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTCTTGAC 358093 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 358094 GAAGATCTGCAT 358105 >seq4080 Length=441467 Score = 91.5 bits (100), Expect = 2e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 60068 CCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATA 60127 || || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||||| Sbjct 282365 CCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTATA 282424 Query 60128 CTACCGAGGA 60137 ||| |||||| Sbjct 282425 CTATCGAGGA 282434 >seq4241 Length=1709304 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 || || || || || | |||| ||||||||||| |||||||| | ||||| | || Sbjct 639154 CGTAAAACTAAGTGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGAAAGAGTTCTGCCG 639213 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || ||||| || ||||| || || | ||||| || || | || | || ||| ||| Sbjct 639214 TCTTCCAGCTGTTTGCCAGCAAAGATTAAACGCTGTTGATCAGGTGGAATGCCCTCTTTG 639273 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| |||| | ||||| | | | || || | || || || | ||||| Sbjct 639274 TCC-TGAATTTTGGCTTTGACGTTTTCTATGGTATCCGAAGCCTCAACTTCAAGGGTGAT 639332 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||||| || || || ||||| || ||||| |||||| Sbjct 639333 GGTTTTTCCTGTGAGTGTCTTGACGAAGATCTGCATT 639369 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||||| | ||||| || ||||| | ||| || || || || ||||| |||| Sbjct 640158 TCCTCCTCGAAGACGCAGTACTAAATGGAGTGTTGATTCTTTCTGGATGTTGTAGTCAGA 640217 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| | | || || | |||||| ||||| || || || || ||||| || | || Sbjct 640218 AAGAGTTCTGCCATCTTCCAACTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGGGG 640277 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | | || |||||| ||| |||| | ||| | | | | ||||| | ||||| Sbjct 640278 AATACCTTCTTTGTCC-TGAATTTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCCA 640336 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | ||||| ||||| || || || || || |||||||||||||| Sbjct 640337 CCTCAAGAGTGATTGTTTTTCCAGTAAGAGTTTTCACAAAGATTTGCAT 640385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571784398840600