Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq4164 105 1e-17 seq4247 102 1e-16 seq4241 102 1e-16 >seq4164 Length=697328 Score = 105 bits (116), Expect = 1e-17 Identities = 109/140 (78%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 |||| |||| ||| | | ||| | || | |||||||| ||| || ||||||||||| Sbjct 357877 TTCCGCCTCGAAGCCGAAGTACAAGGTGAAGTGTAGATTCCTTTTGA-ATATTATAATCG 357935 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 || | ||| | | || || | |||||||||||| ||||||||||| |||||||| ||| Sbjct 357936 GACAAAGTGCGACCGTCCTCGAGTTGTTTTCCAGCGAAAATCAATCTCTGCTGATCAGGA 357995 Query 146168 GGAATTCCTTCTTTATCTTG 146187 |||||||||||||| || || Sbjct 357996 GGAATTCCTTCTTTGTCCTG 358015 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| ||||| |||||||| |||||| ||||| || | |||| || || || Sbjct 358125 ACCAAATGCAAAGTTGATTCTTTTTGTATATTGTAATCGGATAACGTTCGGCCGTCTTCA 358184 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||||||||| || ||||||||||| || ||||| || ||||| ||||| || ||||| Sbjct 358185 AGTTGTTTTCCGGCGAAAATCAATCTCTGTTGATCTGGTGGAATACCTTCCTTGTCTTG 358243 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || || |||||||| || || || ||||| ||||| || || || Sbjct 358335 CCACCGCGAAGCCTCAAAACCAAATGCAAGGTCGACTCTTTCTGAATATTGTAGTCGGAG 358394 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | || || | ||||||||| |||||||| || || |||||||||||||| Sbjct 358395 AGTGTGCGACCGTCCTCGAGTTGTTTTCCGGCAAAAATTAACCTCTGCTGATCCGGAGGG 358454 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| || || || Sbjct 358455 ATTCCTTCCTTGTCCTG 358471 >seq4247 Length=3167485 Score = 102 bits (112), Expect = 1e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 || || |||||||| ||||||||||| || || || ||||| ||||| |||| ||| Sbjct 1136604 AAAACTAAATGTAACGTAGATTCTTTCTGAATGTTGTAGTCTGACAGAGTCCTGCCATCT 1136545 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCT 146176 || ||||| || ||||||||||| || ||||| ||||| || ||||||||| Sbjct 1136544 TCCAATTGCTTGCCAGCAAAAATTAACCTTTGTTGATCTGGCGGAATTCCT 1136494 >seq4241 Length=1709304 Score = 102 bits (112), Expect = 1e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| |||| ||| | | ||| ||||| | || |||||||| || || || || | Sbjct 640157 TTCCTCCTCGAAGACGCAGTACTAAATGGAGTGTTGATTCTTTCTGGATGTTGTAGTCAG 640216 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||||||||||| ||| || || || ||||||||||| |||| | ||||||||| || | Sbjct 640217 AAAGAGTTCTGCCATCTTCCAACTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGGG 640276 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| |||||||| || || Sbjct 640277 GAATACCTTCTTTGTCCTG 640295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743483228998400