Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq4254 127 2e-24 >seq4254 Length=3256360 Score = 127 bits (140), Expect = 2e-24 Identities = 136/177 (77%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 16487 TTTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATA 16546 ||||||||| ||| |||||||||| || ||||||||| |||||| || ||||||||| Sbjct 698769 TTTTCTTTGAGATCAGAAATATAAGTTTCGATTAGTAAAGAATACATCTCCGAATGAATA 698828 Query 16547 TTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTA-CTTCAGA 16605 ||||| || || || || ||||||||||| || | ||||||| |||| || || | || Sbjct 698829 TTCTCTATGGCGATTTGGAAACCATAAAAACAGCGTGCTTCGGCAATTTTTACCTCCTGA 698888 Query 16606 GTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGC 16662 | ||| || || ||| ||||| ||||| || |||||| ||| || ||||| || Sbjct 698889 CT-AAATCTCTCAATTAAATTTTCATTAACAATACCATCGGAAGCAGCGAAAAATGC 698944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462485145397000