Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq4164 96.9 3e-15 seq4241 84.2 2e-11 >seq4164 Length=697328 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 45122 CTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG 45181 || || ||||| |||| || ||| |||||||| ||||||||| ||| |||| || Sbjct 358347 CTCAAAACCAAATGCAAGGTCGACTCTTTCTGAATATTGTAGTCGGAGAGTGTGCGACCG 358406 Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || || |||||||||||||| || || |||| ||| || || ||||| | || |||||| Sbjct 358407 TCCTCGAGTTGTTTTCCGGCAAAAATTAACCTCTGCTGATCCGGAGGGATTCCTTCCTTG 358466 Query 45242 TCCGCAATTTT 45252 ||| |||||| Sbjct 358467 TCCTGAATTTT 358477 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||| ||||| || || ||| || |||| |||| || ||||||||||| ||||| Sbjct 357915 TCCTTTTGAATATTATAATCGGACAAAGTGCGACCGTCCTCGAGTTGTTTTCCAGCGAAA 357974 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||| | ||| || || ||||| | || || |||||| |||||| || || | Sbjct 357975 ATCAATCTCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATTTTAGCTTTGACATTC 358034 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | ||||| | || || |||| || || ||||| || || | |||||| || Sbjct 358035 TCAATTGTGTCCGATGCTTCAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTCTTGACG 358094 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 358095 AAGATCTGCAT 358105 >seq4241 Length=1709304 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 45121 TCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATC 45180 || ||| || ||||| || ||| ||||| ||||||||||| ||| || | | Sbjct 639153 TCGTAAAACTAAGTGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGAAAGAGTTCTGCC 639212 Query 45181 GTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTT 45240 ||| ||||| ||||| || || || || || |||||||| || || || | ||||| || Sbjct 639213 GTCTTCCAGCTGTTTGCCAGCAAAGATTAAACGCTGTTGATCAGGTGGAATGCCCTCTTT 639272 Query 45241 GTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAAT 45300 |||| |||||| || || | | | | ||| | |||| || || | ||| || Sbjct 639273 GTCCTGAATTTTGGCTTTGACGTTTTCTATGGTATCCGAAGCCTCAACTTCAAGGGTGAT 639332 Query 45301 CGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || || ||||| || ||||| ||||| Sbjct 639333 GGTTTTTCCTGTGAGTGTCTTGACGAAGATCTGCAT 639368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395052834422545