Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4241 127 2e-24 seq4254 107 2e-18 seq4164 105 6e-18 seq3895 89.7 5e-13 seq4196 84.2 2e-11 >seq4241 Length=1709304 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || ||||| ||||| |||||| | || ||||| | || Sbjct 639368 ATGCAGATCTTCGTCAAGACACTCACAGGAAAAACCATCACCCTTGAAGTTGAGGCTTCG 639309 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| |||||| | ||| |||||| || ||| | || || || || Sbjct 639308 GATACCATAGAAAACGTCAAAGCCAAAATTCAGGACAAAGAGGGCATTCCACCTGATCAA 639249 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| |||| || |||||||||||| |||||||| | ||| | |||||| ||| Sbjct 639248 CAGCGTTTAATCTTTGCTGGCAAACAGCTGGAAGACGGCAGAACTCTTTCCGATTACAAC 639189 Query 31373 ATTCAAAAAGAATCGACTCTTCA 31395 |||||||| ||||| || ||||| Sbjct 639188 ATTCAAAAGGAATCCACACTTCA 639166 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || || ||||| || || ||||| ||||| | || || ||| | || Sbjct 640386 CATGCAAATCTTTGTGAAAACTCTTACTGGAAAAACAATCACTCTTGAGGTGGAAGCTTC 640327 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| || ||| | ||| |||||| ||||| | || || || || Sbjct 640326 TGACACAATAGAAAATGTAAAAGCTAAAATTCAGGACAAAGAAGGTATTCCCCCAGATCA 640267 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| ||||| || || ||||| || ||||||||||| | ||| | || || || Sbjct 640266 GCAACGTCTGATCTTTGCTGGAAAGCAGTTGGAAGATGGCAGAACTCTTTCTGACTACAA 640207 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || |||||||| || || ||| | ||||| Sbjct 640206 CATCCAGAAAGAATCAACACTCCATTTAGTACT 640174 >seq4254 Length=3256360 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 57669 GAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAAC 57728 |||||| | |||||| || || ||||| |||||||| || ||||||||||||||||| Sbjct 698971 GAGAGATACTTTATTTCTCATGTCTTGGCATTTTTCGCTGCTTCCGATGGTATTGTTAAT 698912 Query 57729 GAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTAC 57788 || ||||| | || |||||| || || || || | | || || | || ||||| Sbjct 698911 GAAAATTTAATTGAGAGATTTAGTCAGGAGGTAAAAATTGCCGAAGCACGCTGTTTTTAT 698852 Query 57789 GGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACG 57848 || || ||| | ||||| || || | ||||| || |||||||| |||| ||||| || Sbjct 698851 GGTTTCCAAATCGCCATAGAGAATATTCATTCGGAGATGTATTCTTTACTAATCGAAACT 698792 Query 57849 TA 57850 || Sbjct 698791 TA 698790 >seq4164 Length=697328 Score = 105 bits (116), Expect = 6e-18 Identities = 158/219 (72%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| | || || ||||| || || |||| ||||| | || Sbjct 359196 CATGCAGATTTTCGTGAAGACGTTAACCGGGAAAACCATAACTCTCGAAGTTGAGGCTTC 359137 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 || | | |||| | || || || ||| | ||| ||||||||| | || || |||| Sbjct 359136 TGATACTATCGAGAATGTAAAGGCAAAGA-TCCAGGATAAGGAAGGCATCCCACCAGACC 359078 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTAT 31369 |||||||| | || |||||||| || ||| | ||||| | | | || || ||||| Sbjct 359077 AGCAGCGTTTGATTTTCGCTGGAAAGCAGCTTGAAGA-TGGACGCACCTTGTCAGATTAC 359019 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGA 31408 || ||||| || ||||| ||||| ||| |||| || ||| Sbjct 359018 AATATTCAGAAGGAATCCACTCTCCATTTGGTTCTCAGA 358980 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || |||| || || || || ||||||||||| | || || ||| | || Sbjct 358333 ATGCAGATCTTTGTAAGAACACTCACTGGTAAAACGATCACTCTGGAAGTCGAAGCATCA 358274 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| |||||| || ||| ||||||||||| | || || || || Sbjct 358273 GACACAATTGAAAATGTCAAAGCGAAAATTCAAGACAAGGAAGGTATTCCACCAGATCAA 358214 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || ||||| || ||||| | |||||| || | |||||| || Sbjct 358213 CAGAGATTGATTTTCGCCGGAAAACAACTTGAAGACGGCCGAACGTTATCCGATTACAAT 358154 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||||||||| ||| | ||| |||| ||| | || | || |||| Sbjct 358153 ATACAAAAAGAATCAACTTTGCATTTGGTTCTTCGTCTCCGTGGTGGTA 358105 >seq3895 Length=328041 Score = 89.7 bits (98), Expect = 5e-13 Identities = 130/182 (71%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 23005 AACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGAC-- 23062 ||| ||| | ||||| ||||| || || | |||||||| || || || || |||| Sbjct 5856 AACGAACATATTGACAGCGATAGAAGCCAAGTTGCATACAGCGACTTCTTCA--GGACTG 5799 Query 23063 GTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGG 23122 | ||| || ||||||||||| |||| ||||| || || |||||||| | || || Sbjct 5798 GAGTATTCGACAATTTCGGTGCATAAGTTGCTGCATTTGATCGTGCCTAGATGTTGATGA 5739 Query 23123 TTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGC 23182 || ||||||||| || ||| ||||| ||||| || || || || || || || ||| Sbjct 5738 TTCGATTTTCGATTACAATGATCTTTGTAAAGCATATAAGGTGTTCCAGTTTCTACTTGC 5679 Query 23183 GA 23184 || Sbjct 5678 GA 5677 Score = 84.2 bits (92), Expect = 2e-11 Identities = 118/163 (72%), Gaps = 7/163 (4%) Strand=Plus/Minus Query 22511 GGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCC 22570 ||||||| |||||| ||||| || | |||||| || |||||||| || ||||| || || Sbjct 6508 GGTTCGATAGATTCGTTGTTCCCTAATATCTGTGCCGTCGAAGCCGTTGGCATTGGTGCT 6449 Query 22571 AACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAG--CATCGACCAGT 22628 | | ||||| ||||| | ||||||||| | || || ||| | ||| ||| | Sbjct 6448 ATTAAGAGCGAATTTCTTACGCCGTGCTTCGCGATCTTCGCCTTCAATTCATT--CCAAT 6391 Query 22629 CCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTG 22671 ||| | | | | |||| | ||||| ||||||||||||||| Sbjct 6390 TCCATAAAGCTGTCGGCTTGACATT---CCACATATCGTATTG 6351 >seq4196 Length=1840941 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || ||||| || || || ||||| |||||| |||| || || | || Sbjct 1068582 CATGCAAATCTTTGTGAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTAGAGGCCTC 1068641 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | | |||| |||||| | || || ||||| || | || || || || Sbjct 1068642 CGATACCATTGAAAATGTCAAAGCCAAGATTCAAGATAAGGAGGGAATTCCACCGGATCA 1068701 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||| || || || ||||||||||||||| |||| || Sbjct 1068702 GCAACGACTCATCTTCGCTGGCAAACAGCTGGAGGA 1068737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445740517688400