Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3895 111 2e-19 seq4254 102 1e-16 >seq3895 Length=328041 Score = 111 bits (122), Expect = 2e-19 Identities = 183/264 (69%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 63634 GAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63693 |||| | || ||||| || ||| |||| | ||||| ||||| || || ||||| | Sbjct 4873 GAAATTACCTGGACATCTGCTGATTGTTAGTACAGGCATTGAATAACGTTGGTGAAGCAT 4814 Query 63694 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 63753 | ||||| || | | || | | || || || || || ||| ||| ||||| | Sbjct 4813 GTGTAAAGTATCGTCCTGATAAAAAGTTATATGTTTCTATGGCTTTGTCAATATCATTCT 4754 Query 63754 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGT 63813 ||||| || || || || | ||| ||||| ||||||||||| || |||||||| | Sbjct 4753 CGTGAATACCGACAGCAACTCTCATCAACATATGCTGAGGTCTCTCCACAATTTTACCAT 4694 Query 63814 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 63873 | ||||||| || ||| | |||| | |||||||| || | |||||| || ||||| Sbjct 4693 TAATTTTCAGTAAATAGCTTCTTTCAAGTGTTTTAAAGCCGATATAGTTATAACTAAAGT 4634 Query 63874 CTCGTTCGTAAATAATAACCGAAT 63897 |||| || || || ||| | |||| Sbjct 4633 CTCGATCATATATTATAGCAGAAT 4610 Score = 96.9 bits (106), Expect = 4e-15 Identities = 108/142 (76%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 63176 AGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGG 63235 |||||||||| || || ||||| |||||||||| |||| | ||| ||||| ||| Sbjct 5489 AGTATACAATTCTTTAAATTCGTCGCCCCAAACATCAGCCAAGCCAGGGGATTCAGACGG 5430 Query 63236 ACACATCAACGACCAC-TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 63294 |||||| || |||| |||| |||| | ||| |||| |||||| ||||| || |||| Sbjct 5429 ACACATTAAGCTCCACATCTCA-TCATTATACACACGTTCCATAAAAAGATCTGGTATCC 5371 Query 63295 AAAGAGCTATAAATAGATCTCT 63316 ||||| | |||||||||||| Sbjct 5370 AAAGACCATAAAATAGATCTCT 5349 >seq4254 Length=3256360 Score = 102 bits (112), Expect = 1e-16 Identities = 155/218 (71%), Gaps = 7/218 (3%) Strand=Plus/Plus Query 33848 AACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATC 33905 || |||||| ||||| | ||||| |||||| ||||||||||| || || ||||| || Sbjct 698786 AATATAAGTTTCGATTAGTAAAGA--ATACATCTCCGAATGAATATTCTCTATGGCGATT 698843 Query 33906 TGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCT 33965 || || || || ||||| | || |||| ||| | || || || ||||| || | Sbjct 698844 TGGAAACCATAAAAACAGCGTGCTTCGGCAATTTTTACCTCCTGACTAAATCTCTCAATT 698903 Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 ||||||||||| || || ||||| || || ||||| ||||| ||||| ||||| Sbjct 698904 AAATTTTCATTAACAATACCATCGGAAGCAGCGAAAAATGCCAAGACATGAGAAATAAAG 698963 Query 34026 TATTTTTCGTCTGGTGTTAG---TTTATTCCAATCATT 34060 ||| | ||||| | |||| || || |||||| || Sbjct 698964 TATCTCTCGTCGGAATTTAGCTTTTCATCCCAATCTTT 699001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629781031215600