Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq3895 125 7e-24 seq4254 114 1e-20 seq4063 96.9 3e-15 >seq3895 Length=328041 Score = 125 bits (138), Expect = 7e-24 Identities = 156/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 37143 AAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTC 37202 ||| |||||||||||||| | ||| |||| ||||| || ||||||||||| || || || Sbjct 6554 AAATTCTCCAGATAATACGCGCCTTATATAGATATTACTCGTATATGGTTCGATAGATTC 6495 Query 37203 ATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATT 37262 || || | |||||| || | || || || || |||||||||||||||| || ||| Sbjct 6494 GTTGTTCCCTAATATCTGTGCCGTCGAAGCCGTTGGCATTGGTGCTATTAAGAGCGAATT 6435 Query 37263 TCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG 37322 ||| | || || | || || || | ||||||||||| ||||||| |||| || Sbjct 6434 TCTTACGCCGTGCTTCGCGATCTTCGCCTTCAATTCATTCCAATTCCATAAAGCTGTCGG 6375 Query 37323 GTT--CTTTAACCACATATCATATTGTAGAAT 37352 || | || ||||||||| ||||| ||||| Sbjct 6374 CTTGACATT--CCACATATCGTATTGAAGAAT 6345 Score = 93.3 bits (102), Expect = 4e-14 Identities = 189/280 (68%), Gaps = 18/280 (6%) Strand=Plus/Minus Query 38097 TCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTG 38155 ||||||| | || |||||| || || ||||||||||||||||| | ||||| | | || Sbjct 5226 TCTTAAGTTCTAAAAAATCCAAAATGTCAGCGTGCCATGGTTCCAAATAAACAGCAAATG 5167 Query 38156 CTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTA 38215 ||||||||||||| | ||||| |||| | || || || | | |||||||| ||| Sbjct 5166 CTCCTGGTCTTTTGTTTCCTCCTTGATCGACGTAAATAGCTATTTCATTATATAACTTTA 5107 Query 38216 ACATAGGTACTATACCATTAG----ATTTGCCGTTTATACCGGATATATAAGTACCCTTA 38271 | | || || | |||||||| ||| ||| || ||| || | || Sbjct 5106 AAACAGACACCAAACCATTAGTCGTATT---CGTATACTCCGCATTT----------TTG 5060 Query 38272 GCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCAT 38331 || || || | ||| ||||||||||| || |||| ||| || | | |||| Sbjct 5059 GCACGAATGCAATGTATATTAAATCCTATTCCTCCAGCATATTTGCTAATGAGTGAGCAT 5000 Query 38332 TGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCT 38371 ||||||| | || | ||||||| ||| || ||||||| Sbjct 4999 CTTTTTAACATGCCATAAATACCTTTTATGCTATCATCCT 4960 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 38412 AGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATT 38471 ||| | ||| || ||||| || || || |||||| | || || | | || ||| | || Sbjct 4845 AGTACAGGCATTGAATAACGTTGGTGAAGCATGTGTAAAGTATCGTCCTGATAAAAAGTT 4786 Query 38472 ATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAG 38531 |||||||||||| | | || |||||| |||||||||| | || || ||||| | Sbjct 4785 ATATGTTTCTATGGCTTTGTCAATATCATTCTCGTGAATACCGACAGCAACTCTCATCAA 4726 Query 38532 CATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAA 38591 |||||| || ||||| || | |||||| ||| ||| |||| ||| | |||| | Sbjct 4725 CATATGCTGAGGTCTCTCCACAATTTTACCATTAATTTTCAGTAAATAGCTTCTTTCAAG 4666 Query 38592 TGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTAT 38634 |||||| | || | ||| |||| | | |||| ||| ||| Sbjct 4665 TGTTTTAAAGCCGATATAGTTATAACTAAAGTCTCGATCATAT 4623 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 37404 AGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATT 37463 ||||| ||||||||||| ||||| || ||||||| | || || ||||||| ||| || Sbjct 6221 AGCTAATTCGCAACTAGCTTCTAAGGCACCATAATAAAGCGTCTCAAAAATTTTTATGTT 6162 Query 37464 TAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAA 37523 | | || || |||| || ||||||| ||| | || ||| | ||| | || ||||| Sbjct 6161 GAGTTCCTTCGCCTCTTTACTCTCGAATGGATATCGCATTAAAAGGAACGCGTCTGCCAA 6102 Query 37524 ACCCTGAACACCGATACCT 37542 ||| || | ||||||||| Sbjct 6101 ACCTTGTATCCCGATACCT 6083 >seq4254 Length=3256360 Score = 114 bits (126), Expect = 1e-20 Identities = 153/211 (73%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 11899 ATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958 ||| || || |||| |||| |||||| || ||||||||||| || || || ||||| || Sbjct 698789 ATAAGTTTCGATTAGTAAAGAATACATCTCCGAATGAATATTCTCTATGGCGATTTGGAA 698848 Query 11959 TCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATT 12018 ||||| ||||| ||||| || | | | ||| ||| | |||||| || |||||| Sbjct 698849 ACCATAAAAACAGCGTGCTTCGGCAATTTTTACCTCCTGACTAAATCTCTCAATTAAATT 698908 Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTT 12078 ||||| ||||||||||| || || |||||||| | | ||| ||||||||| | Sbjct 698909 TTCATTAACAATACCATCGGAAGCAGCGAAAAATGCCAAGACATGAGAAATAAAGTATCT 698968 Query 12079 TTCGTC----TTTAGTTAATTTATCCCAATC 12105 ||||| ||||| | || ||||||||| Sbjct 698969 CTCGTCGGAATTTAGCT-TTTCATCCCAATC 698998 Score = 100 bits (110), Expect = 3e-16 Identities = 155/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 11432 ACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGAC 11491 || |||||| | |||||| | |||| ||| ||||| |||||||| || || | | || Sbjct 697983 ACCTTTTCAAATCCTAACGCAACAAATAGTCTGTCTGCAACGAATTCGATGTAATTACAC 698042 Query 11492 ATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTT 11551 |||| |||||||| ||||| | || || || | || ||||||| || || ||| Sbjct 698043 ATTAGCGTGCAATTCATTCCTATCAATTCAACTGGCAATGCCTCTGTCAAGAATTCTTTT 698102 Query 11552 TCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAAT 11611 || || | || |||| || || || || | | || || ||| ||| | | | Sbjct 698103 TCAATTTCCACGGCATTCATTATGATTGA---TTTCACGCGCTCGAATGATGGCTTTTGT 698159 Query 11612 AAA---TGTTTAAACATTAAACACGCAAAATCACAATGTA 11648 | | |||||||||||||||||||||||||||||||||| Sbjct 698160 ACAATGTGTTTAAACATTAAACACGCAAAATCACAATGTA 698199 >seq4063 Length=1308840 Score = 96.9 bits (106), Expect = 3e-15 Identities = 124/170 (73%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 37377 ATATGTCTCATAAGGTCCGTAAATTTTAGC---TAGTTCGCAACTAGATTCTAGTGCGGC 37433 ||||| || |||||| || | ||| ||| || ||||||||||| |||||| || | Sbjct 801240 ATATGACTTATAAGGACCTT---TTTCAGCAGCTATTTCGCAACTAGCTTCTAGAGCACC 801184 Query 37434 ATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGC 37493 |||||| | || || |||||||| ||||||||| || ||||||| || || |||| Sbjct 801183 ATAATAAAGAGTCTCAAAAATTTGAATATTTAATTCATTAGCTTCTTTACTTTCAAATGG 801124 Query 37494 ATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTA 37543 ||| | || ||| ||||| |||| || || || || | || || |||| Sbjct 801123 ATATCTCATTAAAATAAATGCATCTGCTAATCCTTGTATTCCAATTCCTA 801074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468497596278800