Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3895 98.7 1e-15 seq4254 95.1 2e-14 >seq3895 Length=328041 Score = 98.7 bits (108), Expect = 1e-15 Identities = 176/257 (68%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 66427 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 66486 |||| | || ||||| || ||| |||| | ||||| ||||| || || ||||| | Sbjct 4873 GAAATTACCTGGACATCTGCTGATTGTTAGTACAGGCATTGAATAACGTTGGTGAAGCAT 4814 Query 66487 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 66546 | ||||| || | | || | | || || || || || ||| ||| ||||| | Sbjct 4813 GTGTAAAGTATCGTCCTGATAAAAAGTTATATGTTTCTATGGCTTTGTCAATATCATTCT 4754 Query 66547 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 66606 ||||| || || || || | ||| ||||| ||||||||||| || || || || | Sbjct 4753 CGTGAATACCGACAGCAACTCTCATCAACATATGCTGAGGTCTCTCCACAATTTTACCAT 4694 Query 66607 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 66666 | ||||||| || ||| | |||| | |||||||| || | |||||| || ||||| Sbjct 4693 TAATTTTCAGTAAATAGCTTCTTTCAAGTGTTTTAAAGCCGATATAGTTATAACTAAAGT 4634 Query 66667 CTCGTTCGTAAATAATA 66683 |||| || || || ||| Sbjct 4633 CTCGATCATATATTATA 4617 Score = 86.0 bits (94), Expect = 8e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 65124 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 65183 || || | || |||||| ||| | |||||| ||| || | ||||||||| | | Sbjct 6616 ATGTCTTTATCCCATAAACCTCTGGCAGTTAAATCTCGTAGTAAATGCGGATTGATGATG 6557 Query 65184 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 65243 |||||||||||| ||||| | || | || |||||||| ||||| ||||| | ||| Sbjct 6556 ACAAATTCTCCAGATAATACGCGCCTTATATAGATATTACTCGTATATGGTTCGATAGAT 6497 Query 65244 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 65290 || || || || || || || || || || || || ||||| ||||| Sbjct 6496 TCGTTGTTCCCTAATATCTGTGCCGTCGAAGCCGTTGGCATTGGTGC 6450 >seq4254 Length=3256360 Score = 95.1 bits (104), Expect = 2e-14 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 36441 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATC 36500 ||||| |||||| ||||||||||| || || ||||| ||||| || || || ||||| | Sbjct 698805 AAAGA--ATACATCTCCGAATGAATATTCTCTATGGCGATTTGGAAACCATAAAAACAGC 698862 Query 36501 TAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTC 36560 || |||| ||| | ||| || || ||||| || |||||||||||| || || | Sbjct 698863 GTGCTTCGGCAATTTTTACCTCCTGACTAAATCTCTCAATTAAATTTTCATTAACAATAC 698922 Query 36561 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT 36611 | || || || ||||| ||||| ||||| ||||| ||| | |||| Sbjct 698923 CATCGGAAGCAGCGAAAAATGCCAAGACATGAGAAATAAAGTATCTCTCGT 698973 Score = 86.0 bits (94), Expect = 8e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 36656 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 36715 |||||||| | |||||||| || || | |||||||||||||| | ||| || ||| || Sbjct 699176 ACTTCTTCTATGGTCCAAAAGGAAGCTACAGCCTTTTTATACATTTCCCAAATATCAGGA 699235 Query 36716 TATTGAATTGGAAAAATAACAAATCTATTTTGATTTTTTGCAAGGATTGGTTCCA 36770 ||||| || ||||| || ||||| | |||| || ||| | || | |||||||| Sbjct 699236 TATTGTATAGGAAAGATTACAAAGCGATTTGGACTTTCTTGGAGTAGTGGTTCCA 699290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658134584841800