Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq4241 116 4e-21 seq4164 104 2e-17 >seq4241 Length=1709304 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||||| ||||| || | || || ||||| || ||||| || || Sbjct 640159 CCTCCTCGAAGACGCAGTACTAAATGGAGTGTTGATTCTTTCTGGATGTTGTAGTCAGAA 640218 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| | ||| || |||||| ||||||||||||||||||| || || Sbjct 640219 AGAGTTCTGCCATCTTCCAACTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGGGGA 640278 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| |||| | ||||| | ||| | |||||| | | ||||| Sbjct 640279 ATACCTTCTTTGTC-CTGAATTTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCCAC 640337 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || | || || || || | ||||| || || |||||||| Sbjct 640338 CTCAAGAGTGATTGTTTTTCCAGTAAGAGTTTTCACAAAGATTTGCAT 640385 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 || ||||||||||||| || || || ||||||||||| |||||| | || || | Sbjct 639154 CGTAAAACTAAGTGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGAAAGAGTTCTGCCG 639213 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| |||||||| |||||| |||| | ||| || ||||| || || ||||| |||||| Sbjct 639214 TCTTCCAGCTGTTTGCCAGCAAAGATTAAACGCTGTTGATCAGGTGGAATGCCCTCTTTG 639273 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| |||| | ||| | | ||| | || || | | ||| || |||| ||| | Sbjct 639274 TC-CTGAATTTTGGCTTTGACGTTTTCTATGGTATCCGAAGCCTCAACTTCAAGGGTGAT 639332 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || || | || || ||||| || ||||| Sbjct 639333 GGTTTTTCCTGTGAGTGTCTTGACGAAGATCTGCAT 639368 >seq4164 Length=697328 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 |||||||| | || | || | ||||| ||||| || |||||||| ||||||||| | Sbjct 357879 CCGCCTCGAAGCCGAAGTACAAGGTGAAGTGTAGATTCCTTTTGAATATTATAATCGGAC 357938 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| ||||| ||||| ||||| | |||| | |||||||| ||||| Sbjct 357939 AAAGTGCGACCGTCCTCGAGTTGTTTTCCAGCGAAAATCAATCTCTGCTGATCAGGAGGA 357998 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| |||| | ||| | | || | |||||| | | || || Sbjct 357999 ATTCCTTCTTTGTC-CTGAATTTTAGCTTTGACATTCTCAATTGTGTCCGATGCTTCAAC 358057 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| || || || || || ||||| || |||||| Sbjct 358058 TTCCAATGTGATGGTCTTTCCTGTTAAAGTCTTGACGAAGATCTGCATA 358106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496035197284000