Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3895 104 3e-17 seq4254 98.7 1e-15 >seq3895 Length=328041 Score = 104 bits (114), Expect = 3e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 79003 ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 79062 || |||| || |||||| ||| | |||||| ||| || | ||||||||| | | Sbjct 6616 ATGTCTTTATCCCATAAACCTCTGGCAGTTAAATCTCGTAGTAAATGCGGATTGATGATG 6557 Query 79063 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGAT 79122 |||||||||||| ||||| | || | || |||||||| ||||||||||| | ||| Sbjct 6556 ACAAATTCTCCAGATAATACGCGCCTTATATAGATATTACTCGTATATGGTTCGATAGAT 6497 Query 79123 TCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGC 79169 || || || || || || || || || || ||||||||||| ||||| Sbjct 6496 TCGTTGTTCCCTAATATCTGTGCCGTCGAAGCCGTTGGCATTGGTGC 6450 Score = 95.1 bits (104), Expect = 2e-14 Identities = 175/257 (68%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 80306 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 80365 |||| | || ||||| || ||| |||| | ||||| ||||| || || ||||| | Sbjct 4873 GAAATTACCTGGACATCTGCTGATTGTTAGTACAGGCATTGAATAACGTTGGTGAAGCAT 4814 Query 80366 GCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATT 80425 | ||||| || | | || | | || || || || || ||| || ||||| | Sbjct 4813 GTGTAAAGTATCGTCCTGATAAAAAGTTATATGTTTCTATGGCTTTGTCAATATCATTCT 4754 Query 80426 GATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTAT 80485 ||||| || || || || | ||| ||||| ||||||||||| || || || || || Sbjct 4753 CGTGAATACCGACAGCAACTCTCATCAACATATGCTGAGGTCTCTCCACAATTTTACCAT 4694 Query 80486 TTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 80545 | ||||||| || || | |||| | |||||||| || | |||||| || ||||| Sbjct 4693 TAATTTTCAGTAAATAGCTTCTTTCAAGTGTTTTAAAGCCGATATAGTTATAACTAAAGT 4634 Query 80546 CTCGTTCGTAAATAATA 80562 |||| || || || ||| Sbjct 4633 CTCGATCATATATTATA 4617 Score = 86.0 bits (94), Expect = 9e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 ||||||| ||||| || ||||||||||| || ||||| || ||||| || ||||| | Sbjct 4389 CACTAAAGCTCTTTTTGGTCTCCTTGTGTAGGTTAGATACTGCAATTCTTGCAGCTAATA 4330 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 | |||||||| ||||| | || | || ||||| |||| ||||| ||| | || | Sbjct 4329 TAGCATAATCAGGATGATTAGTTGCCATCGTAGCTGCAGTTTCAGCTGCAAGATTATCTA 4270 Query 80798 ATTCTACCGTTGTTACTCCATTATATA 80824 | || || ||||||||| ||||| Sbjct 4269 GTATAACTGTAGTTACTCCAGAATATA 4243 Score = 86.0 bits (94), Expect = 9e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 79849 GTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGA 79908 ||||| ||| || || ||||| ||||||||||| | || ||||| |||| ||| Sbjct 5488 GTATACAATTCTTTAAATTCGTCGCCCCAAACATCAGCCAAGCCAGGGGATTCAGACGGA 5429 Query 79909 CACATCAACGACCAC-TCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCA 79967 ||||| || |||| |||| ||||| | || |||| |||||| ||||| || ||||| Sbjct 5428 CACATTAAGCTCCACATCTC-ATCATTATACACACGTTCCATAAAAAGATCTGGTATCCA 5370 Query 79968 AAGAGCTATAAATAGATCTCT 79988 |||| | |||||||||||| Sbjct 5369 AAGACCATAAAATAGATCTCT 5349 >seq4254 Length=3256360 Score = 98.7 bits (108), Expect = 1e-15 Identities = 154/218 (71%), Gaps = 7/218 (3%) Strand=Plus/Plus Query 50226 AACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATC 50283 || |||||| ||||| | ||||| |||||| ||||||||||| || || ||||| || Sbjct 698786 AATATAAGTTTCGATTAGTAAAGA--ATACATCTCCGAATGAATATTCTCTATGGCGATT 698843 Query 50284 TGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCT 50343 || || || || ||||| | || |||| ||| | || || || ||||| ||| | Sbjct 698844 TGGAAACCATAAAAACAGCGTGCTTCGGCAATTTTTACCTCCTGACTAAATCTCTCAATT 698903 Query 50344 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 50403 ||||||||||| || || || || || || ||||| ||||| ||||| ||||| Sbjct 698904 AAATTTTCATTAACAATACCATCGGAAGCAGCGAAAAATGCCAAGACATGAGAAATAAAG 698963 Query 50404 TGTTTTTCGTTGGGTGTTAG---TTTATTCCAATCATT 50438 | | | |||| || |||| || || |||||| || Sbjct 698964 TATCTCTCGTCGGAATTTAGCTTTTCATCCCAATCTTT 699001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718227095517800