Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq4254 96.9 3e-15 >seq4254 Length=3256360 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 14139 GAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATC 14198 ||||| || || || || ||||| |||||| || || || || || || || || || Sbjct 698784 GAAATATAAGTTTCGATTAGTAAAGAATACATCTCCGAATGAATATTCTCTATGGCGATT 698843 Query 14199 TGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCC-GAGTAAAATCTTTCGGC 14257 || ||||||||||| || | ||||| | || ||| ||| || | |||||| || Sbjct 698844 TGGAAACCATAAAAACAGCGTGCTTCGGCAATTTTTACCTCCTGACT-AAATCTCTCAAT 698902 Query 14258 CAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAA 14317 |||||||||||||| |||||||| ||| || ||||||||||| | | |||||| Sbjct 698903 TAAATTTTCATTAACAATACCATCGGAAGCAGCGAAAAATGCCAAGACATGAGAAATAAA 698962 Query 14318 GTATTGCTCTTC 14329 |||| ||| || Sbjct 698963 GTATCTCTCGTC 698974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479700145793000