Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq4164 113 3e-20 seq4241 96.9 3e-15 >seq4164 Length=697328 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||||| | ||| || ||||| | |||||||||||| Sbjct 358107 CCACCACGGAGACGAAGAACCAAATGCAAAGTTGATTCTTTTTGTATATTGTAATCGGAT 358166 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || |||| || | |||||| ||||| |||||||||| ||||||||| | || Sbjct 358167 AACGTTCGGCCGTCTTCAAGTTGTTTTCCGGCGAAAATCAATCTCTGTTGATCTGGTGGA 358226 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || || | ||||||| | ||| |||||| || ||||| Sbjct 358227 ATACCTTCCTTGTCTTGAATTTTCGCTTTGACATTTTCAATTGTGTCTGATGCTTCGACT 358286 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| || || || ||| | ||||| || ||||| Sbjct 358287 TCCAGAGTGATCGTTTTACCAGTGAGTGTTCTTACAAAGATCTGCAT 358333 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | ||| ||||||||||| || || |||| || | |||||| || || ||| Sbjct 357915 TCCTTTTGAATATTATAATCGGACAAAGTGCGACCGTCCTCGAGTTGTTTTCCAGCGAAA 357974 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCT 43037 ||||||| ||| ||||| | || | |||||||| || ||| || ||||||| | Sbjct 357975 ATCAATCTCTGCTGATCAGGAGGAATTCCTTCTTTGTC-CTGAATTTTAGCTTTGACATT 358033 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| |||||| || || || || | || || || ||||| |||| ||| || || Sbjct 358034 CTCAATTGTGTCCGATGCTTCAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTCTTGAC 358093 Query 43098 AAAAATTTGCAT 43109 || || ||||| Sbjct 358094 GAAGATCTGCAT 358105 >seq4241 Length=1709304 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 42880 TCGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCG 42939 || |||||||| |||| ||| || || || | ||| |||||||| | ||||||||| Sbjct 639139 TCACCTCCACGAAGTCGTAAAACTAAGTGAAGTGTGGATTCCTTTTGAATGTTGTAATCG 639198 Query 42940 GACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCC 42999 || | || | |||| |||| |||||||| ||||| || || ||||||||||| | Sbjct 639199 GAAAGAGTTCTGCCGTCTTCCAGCTGTTTGCCAGCAAAGATTAAACGCTGTTGATCAGGT 639258 Query 43000 GGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTC 43058 || | || ||||| || ||| || ||||||| | | | || || |||||| Sbjct 639259 GGAATGCCCTCTTTGTC-CTGAATTTTGGCTTTGACGTTTTCTATGGTATCCGAAGCCTC 639317 Query 43059 GACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || || | || || |||||||| || || || || || || || |||||| Sbjct 639318 AACTTCAAGGGTGATGGTTTTTCCTGTGAGTGTCTTGACGAAGATCTGCATT 639369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381348010309410