Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3895 102 1e-16 seq4254 95.1 2e-14 >seq3895 Length=328041 Score = 102 bits (112), Expect = 1e-16 Identities = 181/264 (69%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 72389 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 72448 |||| | || ||||| || ||| |||| | ||||| ||||| || || ||||| | Sbjct 4873 GAAATTACCTGGACATCTGCTGATTGTTAGTACAGGCATTGAATAACGTTGGTGAAGCAT 4814 Query 72449 GCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATT 72508 | ||||| || | | || | | || || || || || ||| || ||||| | Sbjct 4813 GTGTAAAGTATCGTCCTGATAAAAAGTTATATGTTTCTATGGCTTTGTCAATATCATTCT 4754 Query 72509 GATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTAT 72568 || || || || || || | ||| ||||||||||||||||| || || || || || Sbjct 4753 CGTGAATACCGACAGCAACTCTCATCAACATATGCTGAGGTCTCTCCACAATTTTACCAT 4694 Query 72569 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 72628 | ||||||| || ||| | |||| | |||||||| || | |||||| || ||||| Sbjct 4693 TAATTTTCAGTAAATAGCTTCTTTCAAGTGTTTTAAAGCCGATATAGTTATAACTAAAGT 4634 Query 72629 CTCGTTCGTAAATAATAACCGAAT 72652 |||| || || || ||| | |||| Sbjct 4633 CTCGATCATATATTATAGCAGAAT 4610 Score = 89.7 bits (98), Expect = 7e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 71932 GTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGA 71991 ||||| ||| || || ||||| |||||| ||| | || ||||| ||||| |||| Sbjct 5488 GTATACAATTCTTTAAATTCGTCGCCCCAAACATCAGCCAAGCCAGGGGATTCAGACGGA 5429 Query 71992 CACATCAATGACCAC-TCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCA 72050 ||||| || |||| |||| ||||| || || |||| |||||| ||||| || ||||| Sbjct 5428 CACATTAAGCTCCACATCTC-ATCATTATACACACGTTCCATAAAAAGATCTGGTATCCA 5370 Query 72051 AAGAGCTATAAATAGATCTCT 72071 |||| | |||||||||||| Sbjct 5369 AAGACCATAAAATAGATCTCT 5349 >seq4254 Length=3256360 Score = 95.1 bits (104), Expect = 2e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 42562 TACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATG 42621 ||||||||||| |||||||| || ||| | |||||||||||||| | ||| |||||| | Sbjct 699175 TACTTCTTCTATGGTCCAAAAGGAAGCTACAGCCTTTTTATACATTTCCCAAATATCAGG 699234 Query 42622 ATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658 |||||| || || || || ||||| | ||||||| || Sbjct 699235 ATATTGTATAGGAAAGATTACAAAGCGATTTGGACTT 699271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671100231980200