Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq4241 131 2e-25 seq4164 111 2e-19 >seq4241 Length=1709304 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | ||||| |||||||| | ||| |||||||| || |||||||| || Sbjct 640159 CCTCCTCGAAGACGCAGTACTAAATGGAGTGTTGATTCTTTCTGGATGTTGTAGTCAGAA 640218 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | || || |||||| ||||||||||||||||||| || || Sbjct 640219 AGAGTTCTGCCATCTTCCAACTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGGGGA 640278 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| |||||| ||||| | ||| | ||||| | | ||| || Sbjct 640279 ATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCCACC 640338 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | || || || || | ||||| || || |||||||| Sbjct 640339 TCAAGAGTGATTGTTTTTCCAGTAAGAGTTTTCACAAAGATTTGCAT 640385 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | || |||||||| |||| ||| ||||| ||||| |||||||||||| Sbjct 639142 CCTCCACGAAGTCGTAAAACTAAGTGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGAA 639201 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||| || ||||| |||||| |||| | ||| || ||||| || || Sbjct 639202 AGAGTTCTGCCGTCTTCCAGCTGTTTGCCAGCAAAGATTAAACGCTGTTGATCAGGTGGA 639261 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| |||||||| |||||| ||| | | ||| | || |||| | || ||| Sbjct 639262 ATGCCCTCTTTGTCCTGAATTTTGGCTTTGACGTTTTCTATGGTATCCGAAGCCTCAACT 639321 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | || || || || | ||| || ||||| || ||||| Sbjct 639322 TCAAGGGTGATGGTTTTTCCTGTGAGTGTCTTGACGAAGATCTGCAT 639368 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | || |||||||| |||| ||| ||||||||||| |||||||||||| Sbjct 639370 CCTCCACGAAGTCGTAAAACTAAGTGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAA 639429 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTG 143067 | || || |||||| |||||||| |||||| |||| | ||| ||||| Sbjct 639430 AGAGTTCTGCCGTCTTCCAGTTGTTTGCCAGCAAAGATTAAACGCTGCTG 639479 >seq4164 Length=697328 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| ||||||||| ||||| || || |||||| || |||| ||| ||||||||| Sbjct 357903 TGAAGTGTAGATTCCTTTTGAATATTATAATCGGACAAAGTGCGACCGTCCTCGAGTTGT 357962 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || ||||| | |||| | |||||||| ||||| || ||||||||||| |||||| Sbjct 357963 TTTCCAGCGAAAATCAATCTCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATTTTA 358022 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 ||| | | || | ||||||| | ||| ||||| | || | ||||| || || Sbjct 358023 GCTTTGACATTCTCAATTGTGTCCGATGCTTCAACTTCCAATGTGATGGTCTTTCCTGTT 358082 Query 143162 AATGTTTTTACGAATATTTGCATA 143185 || || || ||||| || |||||| Sbjct 358083 AAAGTCTTGACGAAGATCTGCATA 358106 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| ||||| | || |||||||||||||| ||||||||| Sbjct 358107 CCACCACGGAGACGAAGAACCAAATGCAAAGTTGATTCTTTTTGTATATTGTAATCGGAT 358166 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||| |||||||| || || | |||| | || ||||| || || Sbjct 358167 AACGTTCGGCCGTCTTCAAGTTGTTTTCCGGCGAAAATCAATCTCTGTTGATCTGGTGGA 358226 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| |||||| ||| | | ||| | ||||| | | ||| ||| Sbjct 358227 ATACCTTCCTTGTCTTGAATTTTCGCTTTGACATTTTCAATTGTGTCTGATGCTTCGACT 358286 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||| || || || | |||| |||| || || |||||| Sbjct 358287 TCCAGAGTGATCGTTTTACCAGTGAGTGTTCTTACAAAGATCTGCATA 358334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506984961476400