Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq4241 147 2e-30 seq4164 109 4e-19 seq4196 91.5 1e-13 >seq4241 Length=1709304 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 || ||||||||| ||||| ||||| || ||||| |||||||||||| ||| |||| | Sbjct 639153 TCGTAAAACTAAGTGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGAAAGAGTTCTGCC 639212 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 |||||| | ||||||||||| | || ||||| ||||| || |||||| || ||||| Sbjct 639213 GTCTTCCAGCTGTTTGCCAGCAAAGATTAAACGCTGTTGATCAGGTGGAATGCCCTCTTT 639272 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 ||| ||||||| || || ||||||||||||| | || || || | ||| || Sbjct 639273 GTCCTGAATTTTGGCTTTGACGTTTTCTATGGTATCCGAAGCCTCAACTTCAAGGGTGAT 639332 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||| ||||| || || || || || || ||||| Sbjct 639333 GGTTTTTCCTGTGAGTGTCTTGACGAAGATCTGCAT 639368 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||||||| || || || ||||| || |||||||| || ||| |||| | ||||| Sbjct 640177 ACTAAATGGAGTGTTGATTCTTTCTGGATGTTGTAGTCAGAAAGAGTTCTGCCATCTTCC 640236 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || || || ||||| | |||| |||||| || || ||||| ||||||||||| | Sbjct 640237 AACTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCCTGA 640296 Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| ||| |||||| ||||||| || || | ||| || || | || || ||||| Sbjct 640297 ATTTTAGCT-TTTACATTTTCTATTGTGTCAGAAGCTTCCACCTCAAGAGTGATTGTTTT 640355 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||| ||||| |||||||| Sbjct 640356 TCCAGTAAGAGTTTTCACAAAGATTTGCAT 640385 Score = 93.3 bits (102), Expect = 3e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 || ||||||||| ||||| ||||| |||||||| |||||||||||| ||| |||| | Sbjct 639381 TCGTAAAACTAAGTGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAAAGAGTTCTGCC 639440 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTG 15246 |||||| | |||||||||||| | || ||||| || || Sbjct 639441 GTCTTCCAGTTGTTTGCCAGCAAAGATTAAACGCTGCTG 639479 Score = 82.4 bits (90), Expect = 6e-11 Identities = 97/129 (75%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 15236 AAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTC 15294 ||||| || || ||| |||||| ||||||||||| ||| || ||| |||||| |||| Sbjct 640030 AAACGCTGCTGATCGGGTGGAATGCCTTCTTTGTCTTGAATCTTAGCT-TTTACATTTTC 640088 Query 15295 TATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAA 15354 ||| || || | ||| || || | || |||||||| ||||| ||||| || ||||| Sbjct 640089 TATAGTGTCTGAAGCTTCGACTTCGAGAGTGATGGTTTTGCCTGTGAGAGTCTTCACAAA 640148 Query 15355 AATTTGCAT 15363 || ||||| Sbjct 640149 GATCTGCAT 640157 >seq4164 Length=697328 Score = 109 bits (120), Expect = 4e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| | || || ||||||||||| ||||||||| || ||| ||||||| Sbjct 358124 AACCAAATGCAAAGTTGATTCTTTTTGTATATTGTAATCGGATAACGTTCGGCCGTCTTC 358183 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | |||||| || ||| | ||||| | ||||| || |||||| ||||| ||||| Sbjct 358184 AAGTTGTTTTCCGGCGAAAATCAATCTCTGTTGATCTGGTGGAATACCTTCCTTGTCTTG 358243 Query 15274 AATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 |||||| ||| || ||| |||| || || || ||| || || | || || |||| Sbjct 358244 AATTTTCGCT-TTGACATTTTCAATTGTGTCTGATGCTTCGACTTCCAGAGTGATCGTTT 358302 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| || || ||| ||||||| || |||||| Sbjct 358303 TACCAGTGAGTGTTCTTACAAAGATCTGCATA 358334 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || ||||| || || |||||| | | | | |||| || | |||| Sbjct 357903 TGAAGTGTAGATTCCTTTTGAATATTATAATCGGACAAAGTGCGACCGTCCTCGAGTTGT 357962 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT- 15279 || |||||| | ||||| | || || || ||||||||||||||||| |||||| Sbjct 357963 TTTCCAGCGAAAATCAATCTCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATTTTA 358022 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| || ||| | || || || || | || ||| || || || || ||||| || |||| Sbjct 358023 GCT-TTGACATTCTCAATTGTGTC-CGATGCTTCAACTTCCAATGTGATGGTCTTTCCTG 358080 Query 15339 TCAGAGTTTTTACAAAAATTTGCATA 15364 | | ||| || || || || |||||| Sbjct 358081 TTAAAGTCTTGACGAAGATCTGCATA 358106 >seq4196 Length=1840941 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 15174 CTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15233 |||| || || |||||||| ||| | | | || || | |||||||||||| | | Sbjct 1068772 CTTTCTGGATATTGTAATCTGAGAGAGTGCGTCCATCCTCCAGCTGTTTGCCAGCGAAGA 1068713 Query 15234 TCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTT 15293 | | ||||| || || ||||||||| || || || ||| ||| || ||| ||| Sbjct 1068712 TGAGTCGTTGCTGATCCGGTGGAATTCCCTCCTTATCTTGAATCTTGGCTTTGACATTTT 1068653 Query 15294 CTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAA 15353 | ||||||||| ||||| || | ||| ||||||||||| || || || || |||| Sbjct 1068652 CAATGGTATCGGAGGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTCACAA 1068593 Query 15354 AAATTTGCAT 15363 | |||||||| Sbjct 1068592 AGATTTGCAT 1068583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362158696695945