Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq4241 107 1e-18 seq4164 89.7 3e-13 >seq4241 Length=1709304 Score = 107 bits (118), Expect = 1e-18 Identities = 156/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| || ||||| | ||| || ||||| || || ||||| ||||| | ||||| Sbjct 640171 CGCAGTACTAAATGGAGTGTTGATTCTTTCTGGATGTTGTAGTCAGAAA----GAGTTCT 640226 Query 33215 ----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270 || ||||| ||||||||| ||| || | ||||||||| || | ||| || ||||| Sbjct 640227 GCCATCTTCCAACTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGGGGAATACCTTC 640286 Query 33271 TTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGT 33330 ||| || ||| |||||| ||| || ||||| | || || || ||||| Sbjct 640287 TTTGTCCTGAATTTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCCACCTCAAGAGT 640346 Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || |||||||| ||||||||||| || || ||||||||| Sbjct 640347 GATTGTTTTTCCAGTAAGAGTTTTCACAAAGATTTGCATG 640386 >seq4164 Length=697328 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||||||||| || || |||||||||||||||||||| || || | | ||| || Sbjct 358125 ACCAAATGCAAAGTTGATTCTTTTTGTATATTGTAATCGGATAACGTTCGGCCGTCTTCA 358184 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | ||| ||||| || || || | || || || | || || ||||| || || | Sbjct 358185 AGTTGTTTTCCGGCGAAAATCAATCTCTGTTGATCTGGTGGAATACCTTCCTTGTCTTGA 358244 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 || | ||| || ||| ||| ||||| | || || |||||||| |||||||| Sbjct 358245 ATTTTCGCTTTGACATTTTCAATTGTGTCTGATGCTTCGACTTCCAGAGTGATCGTTTTA 358304 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || ||| |||| || || ||||| Sbjct 358305 CCAGTGAGTGTTCTTACAAAGATCTGCAT 358333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318759553701210