Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq4254 89.7 4e-13 >seq4254 Length=3256360 Score = 89.7 bits (98), Expect = 4e-13 Identities = 118/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 13419 AAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTT 13478 |||||||||| || || | ||| |||||| || ||||||||||| || || || |||| Sbjct 698785 AAATATAAGTTTCGATTAGTAAAGAATACATCTCCGAATGAATATTCTCTATGGCGATTT 698844 Query 13479 GGAAACCATAAAAACATCTAGCCTCTG-ATACCTGAACTTCGGAGTAAAATCTTTCTGCT 13537 |||||||||||||||| | || || | | | | || | || | |||||| || | Sbjct 698845 GGAAACCATAAAAACAGCGTGCTTCGGCAATTTTTACCTCCTGACT-AAATCTCTCAATT 698903 Query 13538 AAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGC 13578 || ||||| ||||| || || || |||||| ||||| || Sbjct 698904 AAATTTTCATTAACAATACCATCGGAAGCAGCGAAAAATGC 698944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430958001682290