Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4241 185 2e-41 seq4164 174 4e-38 seq4254 129 1e-24 seq4247 114 3e-20 >seq4241 Length=1709304 Score = 185 bits (204), Expect = 2e-41 Identities = 179/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||| || | ||||||| ||| | ||| ||||||||||| || || |||||| Sbjct 640156 ATTCCTCCTCGAAGACGCAGTACTAAATGGAGTGTTGATTCTTTCTGGATGTTGTAGTCA 640215 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| || ||||| | || ||||||||||| || || | || ||||| || Sbjct 640216 GAAAGAGTTCTGCCATCTTCCAACTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGG 640275 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| |||||||| || |||||||||||||||| || || || ||| Sbjct 640276 GGAATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCC 640335 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || || || |||||||| ||||| ||||| || ||||| Sbjct 640336 ACCTCAAGAGTGATTGTTTTTCCAGTAAGAGTTTTCACAAAGATTTGCAT 640385 Score = 158 bits (174), Expect = 3e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||| || | ||| ||||| || ||||| || || || || |||||||| |||||||| Sbjct 639160 ACTAAGTGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGAAAGAGTTCTGCCGTCTTCC 639219 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || ||||| |||||||| |||| | |||||||||||| || || || ||||| |||||| Sbjct 639220 AGCTGTTTGCCAGCAAAGATTAAACGCTGTTGATCAGGTGGAATGCCCTCTTTGTCCTGA 639279 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || || ||||| || ||||||| |||||| || || || || || || || || || Sbjct 639280 ATTTTGGCTTTGACGTTTTCTATGGTATCCGAAGCCTCAACTTCAAGGGTGATGGTTTTT 639339 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || ||||| || || || ||||||||| Sbjct 639340 CCTGTGAGTGTCTTGACGAAGATCTGCATT 639369 Score = 93.3 bits (102), Expect = 1e-13 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 ||| ||||| || || || |||||||| || |||||||| |||||||||||||||| || Sbjct 640035 CTGCTGATCGGGTGGAATGCCTTCTTTGTCTTGAATCTTAGCTTTTACATTTTCTATAGT 640094 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 || || ||| || || || || || || || || || || || || ||||| ||||| Sbjct 640095 GTCTGAAGCTTCGACTTCGAGAGTGATGGTTTTGCCTGTGAGAGTCTTCACAAAGATCTG 640154 Query 104557 CATT 104560 |||| Sbjct 640155 CATT 640158 >seq4164 Length=697328 Score = 174 bits (192), Expect = 4e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| |||| |||| |||||| || || | ||||||||| || ||||||||||| || | Sbjct 357877 TTCCGCCTCGAAGCCGAAGTACAAGGTGAAGTGTAGATTCCTTTTGAATATTATAATCGG 357936 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 | | ||| | |||||| || |||||||||||||| ||||| | ||||| |||||||||| Sbjct 357937 ACAAAGTGCGACCGTCCTCGAGTTGTTTTCCAGCGAAAATCAATCTCTGCTGATCAGGAG 357996 Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTA 104510 | ||||||||||| |||||||| || ||||| ||||| || | || || | ||| | Sbjct 357997 GAATTCCTTCTTTGTCCTGAATTTTAGCTTTGACATTCTCAATTGTGTCCGATGCTTCAA 358056 Query 104511 CCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || | ||| || ||||| || || | || || || || |||||||| Sbjct 358057 CTTCCAATGTGATGGTCTTTCCTGTTAAAGTCTTGACGAAGATCTGCAT 358105 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| || || |||||||| || ||||| || || |||| |||| ||||| Sbjct 358121 AAGAACCAAATGCAAAGTTGATTCTTTTTGTATATTGTAATCGGATAACGTTCGGCCGTC 358180 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| ||||||||||| || ||||| | ||||||||||| || || || ||||| || || Sbjct 358181 TTCAAGTTGTTTTCCGGCGAAAATCAATCTCTGTTGATCTGGTGGAATACCTTCCTTGTC 358240 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||| || ||||| |||||||| | || || | ||| || || || || || || Sbjct 358241 TTGAATTTTCGCTTTGACATTTTCAATTGTGTCTGATGCTTCGACTTCCAGAGTGATCGT 358300 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| |||||| ||||||| |||||||| Sbjct 358301 TTTACCAGTGAGTGTTCTTACAAAGATCTGCAT 358333 Score = 147 bits (162), Expect = 5e-30 Identities = 122/149 (82%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| | || | ||| || || || |||||||||||||| ||||| || || || | | Sbjct 358344 AGCCTCAAAACCAAATGCAAGGTCGACTCTTTCTGAATATTGTAGTCGGAGAGTGTGCGA 358403 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 ||||| || ||||||||||| |||||||||| |||||| ||||| ||||| |||||||| Sbjct 358404 CCGTCCTCGAGTTGTTTTCCGGCAAAAATTAACCTCTGCTGATCCGGAGGGATTCCTTCC 358463 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTC 104490 || |||||||| || ||||| |||||||| Sbjct 358464 TTGTCCTGAATTTTAGCTTTGACATTTTC 358492 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || || || || | ||| | || ||||| ||||||||||| || || Sbjct 358966 ATTCCACCACGTAATCTGAGAACCAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCT 359025 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | || ||||| || || |||||||| ||||| | | ||| || || || Sbjct 359026 GACAAGGTGCGTCCATCTTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGT 359085 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| |||||||| |||||||| |||||||| || | ||||| || || Sbjct 359086 GGGATGCCTTCCTTATCCTGGATCTTTGCCTTTACATTCTCGATAGTATCAGAAGCCTCA 359145 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || || || | || || || || |||||||| Sbjct 359146 ACTTCGAGAGTTATGGTTTTCCCGGTTAACGTCTTCACGAAAATCTGCAT 359195 Score = 105 bits (116), Expect = 2e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464 ||||| |||||||||||||| || || | ||| || ||||| || || || ||||| || Sbjct 358813 TCTTCAAGTTGTTTTCCAGCGAAGATCAACCTTTGCTGATCTGGTGGGATACCTTCCTTG 358872 Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524 || ||||| || ||||| |||||||| | ||||| || ||||| || | || || Sbjct 358873 TCTTGAATTTTCGCTTTGACATTTTCAATTGTATCTGAAGCCTCTACTTCCAAAGTGATG 358932 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || | ||||| ||||| ||||||||| Sbjct 358933 GTTTTTCCCGTTAAGGTTTTGACAAAAATCTGCATT 358968 >seq4254 Length=3256360 Score = 129 bits (142), Expect = 1e-24 Identities = 163/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 268815 AAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTA 268874 |||| |||| | || || ||| ||||| ||| || | | || ||||| || | | Sbjct 698988 AAAAGCTAAATTCCGACGAGAGATACTTTATTTCTCATGTCTTGGCATTTTTCGCTGCTT 698929 Query 268875 GTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTG 268934 |||||||| ||||| |||||| || | |||| || |||| |||||| | ||| | | Sbjct 698928 CCGATGGTATTGTTAATGAAAATTTAATTGAGAGATTTAGTCAGGAGGTAAAAATTGCCG 698869 Query 268935 AAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACA 268994 |||| | |||||||| || ||||| || || ||||| ||||||||||| |||||||| Sbjct 698868 AAGCACGCTGTTTTTATGGTTTCCAAATCGCCATAGAGAATATTCATTCGGAGATGTATT 698809 Query 268995 GTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAA 269038 | || |||| || |||||||| |||| ||| |||||| || Sbjct 698808 CTTTACTAATCGAAACTTATATTTCTGATCTCAAAGAAAAGTAA 698765 >seq4247 Length=3167485 Score = 114 bits (126), Expect = 3e-20 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||| |||||| ||||||||||||||||| || ||||| || ||||| || || ||||| Sbjct 1136601 ACTAAATGTAACGTAGATTCTTTCTGAATGTTGTAGTCTGACAGAGTCCTGCCATCTTCC 1136542 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 | ||| || ||||||||||||| ||| |||||||| || || |||||| Sbjct 1136541 AATTGCTTGCCAGCAAAAATTAACCTTTGTTGATCTGGCGGAATTCCT 1136494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151329875603660