Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq4296 91.5 2e-13 >seq4296 Length=1824142 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/201 (71%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 6898 TGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCC 6957 |||||||| | || || || | | ||| || |||| ||||| || || || || ||| Sbjct 1063271 TGAGCAATCATGTAAGTCAACAGGGAATACGATGCTATGTTAAATGGCACTCCCAAACCC 1063212 Query 6958 ATATCTGCTGATCTTTGATAACATTGACAAGATAAAATA---TTGTCTATAGCATAAAAT 7014 |||||||| |||||| ||| ||| |||||| |||| || |||||||| Sbjct 1063211 ATATCTGCACTTCTTTGGTAAAGTTGCGCAGATAATTCCCCGTTGTTTA---CATAAAAT 1063155 Query 7015 TG-ACACAATACATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGC 7073 || ||| || ||||||||||| || || | || || ||||| ||||||||||| Sbjct 1063154 TGTACAAAA-ACATGACATGGTGGCAATGCCATCTTTGGAATGTCAGACGGATTCCAAGC 1063096 Query 7074 AGTCATTAAAATACGTCTATC 7094 || ||||| ||||||||| || Sbjct 1063095 AGACATTATAATACGTCTGTC 1063075 Score = 89.7 bits (98), Expect = 6e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 7175 TATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTT 7234 |||| | ||| ||||| || | ||||||||| ||||||| ||| || ||||||||||| | Sbjct 1062883 TATATTCAGCACCAAAGTGCCGCCATTGAAAGCCATAAACAGGCCCCAAATCACCTTCCT 1062824 Query 7235 CACGATGATTAAATCCTAATCGATTTAAATTAGATTTTGATCCATAAGCATCCCAAATAT 7294 | | || | | || || | || ||| || | ||| | || ||||||| |||| Sbjct 1062823 CTCTATCAGTGAAGCCGCAAGAATCCAAAAAAGCTCGTGAACTATTTTCATCCCAGATAT 1062764 Query 7295 GTACAGAtttttttGATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAAAAGTT 7354 | ||| || | || ||| | | | |||||| |||||||| | ||||| ||||| | Sbjct 1062763 GAACACCCTTATCTGTTAAGTGTTTGGCATTTGTTGATCCTTTGATAAACCACAAAAGCT 1062704 Query 7355 CTTCTACTATTCCACGCCAAAA 7376 | || || | | | ||||| || Sbjct 1062703 CCTCAACCACTGCTCGCCAGAA 1062682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595837402182000