Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq4072 259 3e-64 >seq4072 Length=881125 Score = 259 bits (286), Expect = 3e-64 Identities = 385/541 (71%), Gaps = 20/541 (4%) Strand=Plus/Minus Query 3614 TCAAATGAATTGATATATTTTGCTGACGTATGCGCTGGTCCAGGTGGTTTCAGTGAATAT 3673 || ||||||||| |||| |||||||||||||| ||||| |||||||||||||| |||||| Sbjct 23924 TCCAATGAATTGTTATACTTTGCTGACGTATGTGCTGGACCAGGTGGTTTCAGCGAATAT 23865 Query 3674 ATGTTATGGAGAAAGAAATGGAATATCAAAGGTTATGGTATGACGTTACGCGaaaaa--- 3730 | | | ||||| |||| | ||||| | ||| | || || |||||| Sbjct 23864 GTCCTGTCTAGAAAAGGATGGCGTGCTAAAGGATTTGGATTTACATT----GAAAAATGA 23809 Query 3731 -aaTGATTTTCAACTGAACAGATTTTACGATAACTTTTCGGAAACTTTACACCCGTATTA 3789 ||||||||| | | | ||||| || | |||||||| ||||||| ||| Sbjct 23808 GAATGATTTTACATTAGATGAATTTTTCGCCGGTCCATGTGAAACTTTTCACCCGTTTTA 23749 Query 3790 TGGTCCGCTTAACG--ATGGTAATATCTACAATTCACAAAATCAGAAAGGTTTTTGTGAA 3847 |||| | | || | |||| || | | || |||||||||| | ||| ||| || Sbjct 23748 TGGTTC--TAAAGGCAATGGAGATGTATTTGATGCACAAAATCA-AGAGGAATTT---AA 23695 Query 3848 ATGATTA----TGAAAGATACCGAAGGAAAAGGTGTACATTTTATGATGGCTGACGGTGG 3903 || |||| |||| |||| | || ||||| ||||||||||||||| | || || || Sbjct 23694 ATCATTAATAATGAAGCATACTAATGGTAAAGGCGTACATTTTATGATGTCGGATGGAGG 23635 Query 3904 GTTCTCGGTTGAGGGTCAAGAAAATATGCAAGAAATGTTATCGAAAAAGATGTATTTGTG 3963 || || || || || || ||||| || |||||||| ||||| ||| | | ||||| || Sbjct 23634 CTTTTCAGTAGAAGGCCAGGAAAACATCCAAGAAATTTTATCTAAACAATTATATTTATG 23575 Query 3964 TCAATGTTTAATTGCATTGATGATCATACGAATTGGTGGTCATTGTGTTATCAAATTTTT 4023 ||| ||||| | || |||||||| || || || ||||||| ||| | ||||| || Sbjct 23574 TCAGTGTTTGGTGGCCTTGATGATAGTAAGACCAGGAGGTCATTTTGTAACAAAATTATT 23515 Query 4024 CGATATATTTACACCTTTTAGTGCTGGTTTAGTGTATTTGATGTATAGATCTTTTAATCG 4083 ||| | |||||||| |||||||||||| || | || || ||| || || |||| || Sbjct 23514 TGATTTGTTTACACCATTTAGTGCTGGTCTAATTTACTTAATGCGTAAATGTTTTGATAC 23455 Query 4084 TATTTGTATTTTCAAACCACATTCATCGCGACCGGCCAATTCTGAAAGATATTTGGTGTG 4143 |||| |||||| ||||| | | ||| ||||||||||||| ||| | |||||| | || Sbjct 23454 AATTTCTATTTTTAAACCCAACACTTCGAGACCGGCCAATTCAGAACGTTATTTGATATG 23395 Query 4144 T 4144 | Sbjct 23394 T 23394 Score = 100 bits (110), Expect = 2e-16 Identities = 149/210 (71%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 3889 GATGGCTGACGGTGGGTTCTCGGTTGAGGGTCAAGAAAATATGCAAGAAATGTTATCGAA 3948 ||||| || || || || || || || | | ||||||| || ||||||| ||||| || Sbjct 18310 GATGGAGGATGGAGGCTTTTCTGTAGAAGATTAAGAAAACATCCAAGAAAGTTTATCCAA 18369 Query 3949 AAAGATGTATTTGTGTCAATGTTTAATTGCATTGATGATCATACGAATTGGTGGTCATTG 4008 | | | |||| | ||||| ||||| || |||||||| || || | | |||| Sbjct 18370 ACAATTAAATTTAT--CAATGCTTAATAGCTTTGATGATGGTAAGACCGGAAGAACATTT 18427 Query 4009 TGTTATCAAATTTTTCGATATATTTACACCTTTTAGTGCTGGTTTAGTGTATTTGATGTA 4068 ||||| ||||| || ||| ||||||| | |||||||||||| | ||||| | | Sbjct 18428 TGTTACAAAATTATTTGATTTATTTACGTCGTTTAGTGCTGGTCT----TATTTACTTGA 18483 Query 4069 TAGATCTTTTAATCGTATTTGTATTTTCAA 4098 | || ||||||| ||||| ||||||||| Sbjct 18484 CAAATGTTTTAATAATATTTCTATTTTCAA 18513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276537944041435