Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq4257 122 5e-23 seq4234 122 5e-23 seq4084 114 7e-21 seq4204 109 3e-19 >seq4257 Length=938703 Score = 122 bits (134), Expect = 5e-23 Identities = 86/99 (87%), Gaps = 4/99 (4%) Strand=Plus/Minus Query 11431 ATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490 |||||||| ||| ||||| ||||||||||| |||||||||| ||||||||||| Sbjct 785295 ATATAGAAATAAAAAAAAG----ATTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCG 785240 Query 11491 TTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||| |||||||||||||||||||| Sbjct 785239 TTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 785201 >seq4234 Length=606528 Score = 122 bits (134), Expect = 5e-23 Identities = 88/101 (87%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 11432 TATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491 |||| || | |||||||| | ||||||||||| |||||||||| |||||||||||| Sbjct 557832 TATATAAATTATAAAAAAA-AGTTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGT 557890 Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 ||||||||||||||||| |||||||||||||||||||| || Sbjct 557891 TATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCTTC 557931 >seq4084 Length=947153 Score = 114 bits (126), Expect = 7e-21 Identities = 77/86 (90%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || ||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 827134 AAAAAA--AATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 827191 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||| ||| Sbjct 827192 GCTCTAACCAACTGAGCTAATGAGCC 827217 >seq4204 Length=1175273 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 734245 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 734304 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 734305 TGAGCTAATGGGCC 734318 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261476396738020