Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq4241 140 3e-28 seq4164 123 2e-23 seq4196 89.7 5e-13 >seq4241 Length=1709304 Score = 140 bits (154), Expect = 3e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || |||||||| | |||| || || || | || ||||| || || | ||| || || Sbjct 640155 CATTCCTCCTCGAAGACGCAGTACTAAATGGAGTGTTGATTCTTTCTGGATGTTGTAGTC 640214 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | ||| || ||| |||| ||| ||||| ||||||| | | |||||||||||| Sbjct 640215 AGAAAGAGTTCTGCCATCTTCCAACTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGG 640274 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 ||||||||||||||||| | |||||| || || || | | ||||||| || Sbjct 640275 GGGAATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTC 640334 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || |||| ||||| ||||||||||||||||||||||||||||| |||||| Sbjct 640335 CACCTCAAGAGTGATTGTTTTTCCAGTAAGAGTTTTCACAAAGATTTGCATG 640386 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | | ||| || || ||||| | || ||||||||||| | ||| |||||| Sbjct 639142 CCTCCACGAAGTCGTAAAACTAAGTGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGAA 639201 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| || || ||||||||||| || |||||||||| | || ||||| || ||| Sbjct 639202 AGAGTTCTGCCGTCTTCCAGCTGTTTGCCAGCAAAGATTAAACGCTGTTGATCAGGTGGA 639261 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | |||||| || |||||| | | || || | || || Sbjct 639262 ATGCCCTCTTTGTCCTGAATTTTGGCTTTGACGTTTTCTATGGTATCCGAAGCCTCAACT 639321 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||||||||| || || || || || ||||||||||| Sbjct 639322 TCAAGGGTGATGGTTTTTCCTGTGAGTGTCTTGACGAAGATCTGCAT 639368 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 |||||||| || ||||| ||||||||||| | ||| || || || || | | |||| Sbjct 640036 TGCTGATCGGGTGGAATGCCTTCTTTGTCTTGAATCTTAGCTTTTACATTTTCTATAGTG 640095 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | ||||| || | ||||||||||| || || ||||| ||||||||||||||| Sbjct 640096 TCTGAAGCTTCGACTTCGAGAGTGATGGTTTTGCCTGTGAGAGTCTTCACAAAGATCTGC 640155 Query 95006 AT 95007 || Sbjct 640156 AT 640157 >seq4164 Length=697328 Score = 123 bits (136), Expect = 2e-23 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCT 94856 ||||| |||||||| ||||| ||||| | || |||||| ||| ||| | || | Sbjct 358125 ACCAAATGCAAAGTTGATTCTTTTTGTATATTGTAATCGG--ATAACGTTCGGCCGTCTT 358182 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | || ||||||||| | || || ||||| || |||||||| ||||||||||| ||||| | Sbjct 358183 CAAGTTGTTTTCCGGCGAAAATCAATCTCTGTTGATCTGGTGGAATACCTTCCTTGTCTT 358242 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 |||||| || ||||| | | ||||| | ||||| || | ||||| |||| Sbjct 358243 GAATTTTCGCTTTGACATTTTCAATTGTGTCTGATGCTTCGACTTCCAGAGTGATCGTTT 358302 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || ||| | |||||||||||||| Sbjct 358303 TACCAGTGAGTGTTCTTACAAAGATCTGCAT 358333 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 |||||||||||||| | ||||||||| || |||| ||||| || |||||||| Sbjct 357909 GTAGATTCCTTTTGAATATTATAATCGGACAAAGTGCGACCGTCCTCGAGTTGTTTTCCA 357968 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | || || ||||| |||||||| |||||||| ||||||||||| | |||||| || ||| Sbjct 357969 GCGAAAATCAATCTCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATTTTAGCTTTG 358028 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | ||||| | || || || | |||||||| ||||| || | ||| Sbjct 358029 ACATTCTCAATTGTGTCCGATGCTTCAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTC 358088 Query 94991 TTCACAAAGATCTGCAT 95007 || || ||||||||||| Sbjct 358089 TTGACGAAGATCTGCAT 358105 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || || |||||||| | ||||| || |||||||||||||| || |||||||| || Sbjct 358812 ATCTTCAAGTTGTTTTCCAGCGAAGATCAACCTTTGCTGATCTGGTGGGATACCTTCCTT 358871 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | |||||| || ||||| | | || || | || || || | ||||| Sbjct 358872 GTCTTGAATTTTCGCTTTGACATTTTCAATTGTATCTGAAGCCTCTACTTCCAAAGTGAT 358931 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||||| || | ||||| ||||| |||||||| Sbjct 358932 GGTTTTTCCCGTTAAGGTTTTGACAAAAATCTGCAT 358967 >seq4196 Length=1840941 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||||||||||||||| || | ||||| | || ||||||||| || ||||| || || || Sbjct 1068738 ATCCTCCAGCTGTTTGCCAGCGAAGATGAGTCGTTGCTGATCCGGTGGAATTCCCTCCTT 1068679 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | ||| || || ||||| | | || || | | || || || | ||||| Sbjct 1068678 ATCTTGAATCTTGGCTTTGACATTTTCAATGGTATCGGAGGCCTCTACCTCGAGGGTGAT 1068619 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 |||||| || || || || ||||||||||| |||||| Sbjct 1068618 GGTTTTACCCGTGAGGGTCTTCACAAAGATTTGCATG 1068582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448265171092200