Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4063 224 2e-54 seq4084 179 6e-41 seq4100 147 3e-31 >seq4063 Length=1308840 Score = 224 bits (248), Expect = 2e-54 Identities = 193/239 (81%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | |||||| |||||||||||||| ||||||||||| ||||| Sbjct 343199 GCGAAGCGTCACAGGAAAGTTCTTCGCGATAACATCCAAGGTATCACCAAGCCGGCTATT 343140 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| |||| || |||||||| ||||||||| ||||||| ||| |||| ||||| | | Sbjct 343139 CGTCGTTTGGCACGACGTGGTGGCGTCAAGCGTATCTCTGGCTTGATCTACGAAGAAACT 343080 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| |||||| |||||||| ||| |||||| | |||||| || ||| ||||| Sbjct 343079 CGTGGTGTGTTGAAGGTCTTCCTCGAGAACGTTATTCGCGATGCTGTCACCTACACCGAA 343020 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| ||| | |||||||| || ||||||| | |||||||| |||| |||||||| Sbjct 343019 CACGCGAAAAGGAAGACTGTGACTGCCATGGACGTTGTCTATGCCCTGAAGCGTCAAGG 342961 >seq4084 Length=947153 Score = 179 bits (198), Expect = 6e-41 Identities = 183/239 (77%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | | ||||| ||||||||||| || || ||||||||||| ||| Sbjct 429241 GCGAAGCGACATCGTAAAGTACTTCGCGATAACATCCAGGGTATTACCAAGCCAGCCATC 429182 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || |||||||| |||||||| ||| |||| ||||| | ||||| |||| Sbjct 429181 CGTCGTCTAGCACGTCGTGGCGGAGTCAAACGTATCTCCGGATTAATTTATGAGGAGACA 429122 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| ||||| | | | |||||| | ||| || | ||| |||||| Sbjct 429121 CGTGGTGTACTGAAGGTCTTCTTAGAAAACGTTATTCGTGACGCGGTAACCTACACCGAG 429062 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | || ||||| || ||||||| |||||||||| |||| || ||||| Sbjct 429061 CACGCGAAGAGAAAAACTGTGACTGCCATGGACGTCGTCTATGCCCTGAAGCGCCAAGG 429003 >seq4100 Length=886368 Score = 147 bits (162), Expect = 3e-31 Identities = 195/268 (73%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||| | | | |||| || |||||||| ||||| || |||||||| ||||| Sbjct 581024 GCGAAGCGCCATAGGA-AGGTCTTGCGTGATAACATTCAAGGTATTACCAAGCCTGCTAT 580966 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| ||||| | ||||| || ||||||||| | ||||| ||| | || ||||||| Sbjct 580965 TCGTCGATTGGCTAGACGTGGCGGTGTCAAGCGTATTTCTGGCTTGATATACGAAGAGAC 580906 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | || |||| ||||| | | | ||| |||| |||||| | ||| ||||| Sbjct 580905 CAGAGGCGTCCTGAAAGTCTTCTTGGAAAACGTCATCCGCGATGCTGTAACCTACACCGA 580846 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | |||||||| || | ||||| | ||||| || ||||||||||||| Sbjct 580845 GCACGCTAAGAGGAAGACTGTAACAGCTATGGACGTGGTCTACGCTCTGAAACGTCAAGG 580786 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || ||||| || ||||| Sbjct 580785 AAGAACCCTGTACGGTTTCGGTGGTTAA 580758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070953043985