Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4254 98.7 1e-15 seq3895 98.7 1e-15 >seq4254 Length=3256360 Score = 98.7 bits (108), Expect = 1e-15 Identities = 154/218 (71%), Gaps = 7/218 (3%) Strand=Plus/Plus Query 33570 AACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATC 33627 || |||||| ||||| | ||||| |||||| ||||||||||| || || ||||| || Sbjct 698786 AATATAAGTTTCGATTAGTAAAGA--ATACATCTCCGAATGAATATTCTCTATGGCGATT 698843 Query 33628 TGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCC 33687 || || || || ||||| | || |||| ||| | ||| || || ||||| || Sbjct 698844 TGGAAACCATAAAAACAGCGTGCTTCGGCAATTTTTACCTCCTGACTAAATCTCTCAATT 698903 Query 33688 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 33747 ||||||||||| || || || || || || ||||| ||||| ||||| ||||| Sbjct 698904 AAATTTTCATTAACAATACCATCGGAAGCAGCGAAAAATGCCAAGACATGAGAAATAAAG 698963 Query 33748 TATTTTTCGTCTGGTGTTAG---TTTATTCCAATCATT 33782 ||| | ||||| | |||| || || |||||| || Sbjct 698964 TATCTCTCGTCGGAATTTAGCTTTTCATCCCAATCTTT 699001 >seq3895 Length=328041 Score = 98.7 bits (108), Expect = 1e-15 Identities = 176/257 (68%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 63583 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63642 |||| | || ||||| || ||| |||| | ||||| ||||| || || ||||| | Sbjct 4873 GAAATTACCTGGACATCTGCTGATTGTTAGTACAGGCATTGAATAACGTTGGTGAAGCAT 4814 Query 63643 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 63702 | ||||| || | | || | | || || || || || ||| ||| ||||| | Sbjct 4813 GTGTAAAGTATCGTCCTGATAAAAAGTTATATGTTTCTATGGCTTTGTCAATATCATTCT 4754 Query 63703 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 63762 ||||| || || || || | ||| ||||| ||||||||||| || || || || | Sbjct 4753 CGTGAATACCGACAGCAACTCTCATCAACATATGCTGAGGTCTCTCCACAATTTTACCAT 4694 Query 63763 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 63822 | ||||||| || ||| | |||| | |||||||| || | |||||| || ||||| Sbjct 4693 TAATTTTCAGTAAATAGCTTCTTTCAAGTGTTTTAAAGCCGATATAGTTATAACTAAAGT 4634 Query 63823 CTCGTTCGTAAATAATA 63839 |||| || || || ||| Sbjct 4633 CTCGATCATATATTATA 4617 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 63126 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA 63185 ||||||||| || || ||||| |||||||||| |||| ||||| ||||| |||| Sbjct 5488 GTATACAATTCTTTAAATTCGTCGCCCCAAACATCAGCCAAGCCAGGGGATTCAGACGGA 5429 Query 63186 CACATCAACGACCAC-TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 63244 ||||| || |||| |||| |||| | ||| |||| |||||| ||||| || ||||| Sbjct 5428 CACATTAAGCTCCACATCTCA-TCATTATACACACGTTCCATAAAAAGATCTGGTATCCA 5370 Query 63245 AAGAGCTATAAATAGATCTCT 63265 |||| | |||||||||||| Sbjct 5369 AAGACCATAAAATAGATCTCT 5349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622911030128200