Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4296 91.5 4e-13 >seq4296 Length=1824142 Score = 91.5 bits (100), Expect = 4e-13 Identities = 168/243 (69%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 111314 TTTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTG 111373 ||||||| | || ||||| || || || ||| | | | || || || ||| |||| Sbjct 1062654 TTTTCCATTGCTGACAACTAAACGGGTATTCTGGCGAGCAGTGGTTGAGGAGCTTTTGTG 1062713 Query 111374 GTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGA 111433 |||||| ||| |||||||| || | | ||| || ||| | || ||||| Sbjct 1062714 GTTTATCAAAGGATCAACAAATGCCAAACACTTAACAGATAAGGGTGTTCATATCTGGGA 1062773 Query 111434 TGGAAATGGATCACGTGACTTTCTAGATTCAGTTG-GTCTTGTC-GACAACGAAGAAGGT 111491 || |||| | ||||| | ||| | ||||| ||| | ||| | || | || |||||| Sbjct 1062774 TGAAAATAGTTCACGAGCTTTTTTGGATTC--TTGCGGCTTCACTGATAGAGAGGAAGGT 1062831 Query 111492 GATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATG 111551 ||| | || || ||||| || ||||||||||| ||||||||||| || || ||| ||| Sbjct 1062832 GATTTGGGGCCTGTTTATGGCTTTCAATGGCGGCACTTTGGTGCTGAATATAAAGATATG 1062891 Query 111552 CAC 111554 ||| Sbjct 1062892 CAC 1062894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303276032132390