Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq4164 123 2e-23 seq4241 114 1e-20 >seq4164 Length=697328 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||||| |||| | ||||| ||| |||| || | |||||||| || Sbjct 358333 ATGCAGATCTTTGTAAGAACACTCACTGGTAAAACGATCACTCTGGAAGTCGAAGCATCA 358274 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | |||||| || ||| ||||| ||||| || || || |||||| Sbjct 358273 GACACAATTGAAAATGTCAAAGCGAAAATTCAAGACAAGGAAGGTATTCCACCAGATCAA 358214 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 |||||| |||||| || ||| || ||||| ||||| | | ||| ||| | | ||||| || Sbjct 358213 CAGAGATTGATTTTCGCCGGAAAACAACTTGAAGACGGCCGAA-CGTTATCCGATTACAA 358155 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 || ||||||||||| || | ||||| || Sbjct 358154 TATACAAAAAGAATCAACTTTGCATTTGGT 358125 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || ||||| ||||| | || || | ||||| || || Sbjct 358105 ATGCAGATCTTCGTCAAGACTTTAACAGGAAAGACCATCACATTGGAAGTTGAAGCATCG 358046 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || ||| | |||||| || ||| ||||||||||| || ||||| ||||| Sbjct 358045 GACACAATTGAGAATGTCAAAGCTAAAATTCAGGACAAAGAAGGAATTCCTCCTGATCAG 357986 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||||| || || || |||||||| || | | | | ||||||||| Sbjct 357985 CAGAGATTGATTTTCGCTGGAAAACAACTCGAGGACGGTCGCACTTTGTCCGATTATAAT 357926 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 |||||||| ||||||||| |||| Sbjct 357925 ATTCAAAAGGAATCTACACTTCA 357903 >seq4241 Length=1709304 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || ||| | || |||||| | || ||| | ||||| ||||| Sbjct 639369 AATGCAGATCTTCGTCAAGACACTCACAGGAAAAACCATCACCCTTGAAGTTGAGGCTTC 639310 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||| || | |||||| || ||| |||||||| ||||| || || ||||| Sbjct 639309 GGATACCATAGAAAACGTCAAAGCCAAAATTCAGGACAAAGAGGGCATTCCACCTGATCA 639250 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||| | | || | | ||||| || || ||||| | ||||| | |||||| || Sbjct 639249 ACAGCGTTTAATCTTTGCTGGCAAACAGCTGGAAGACGGCAGAACTCTTTCCGATTACAA 639190 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||||| ||||| ||| |||| ||||| ||| || | | ||||| Sbjct 639189 CATTCAAAAGGAATCCACACTTCACTTAGTTTTACGACTTCGTGGAGG 639142 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | ||||||||| | || || | || || || || Sbjct 640385 ATGCAAATCTTTGTGAAAACTCTTACTGGAAAAACAATCACTCTTGAGGTGGAAGCTTCT 640326 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || ||| || ||| ||||||||||| || || || ||||| Sbjct 640325 GACACAATAGAAAATGTAAAAGCTAAAATTCAGGACAAAGAAGGTATTCCCCCAGATCAG 640266 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | ||||| | | || ||||| | ||||||| ||||| | || || ||| Sbjct 640265 CAACGTCTGATCTTTGCTGGAAAGCAGTTGGAAGATGGCAGAACTCTTTCTGACTACAAC 640206 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || || |||||||| ||| | |||||||| Sbjct 640205 ATCCAGAAAGAATCAACACTCCATTTAGT 640177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429911660919975