Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4164 127 2e-24 seq4241 102 8e-17 >seq4164 Length=697328 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || || | || || ||||| | || || ||||| ||||| |||||||| | Sbjct 358969 CCACCACGTAATCTGAGAACCAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCTGAC 359028 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || |||||||| || ||| | || |||||||||||||| || ||| Sbjct 359029 AAGGTGCGTCCATCTTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTGGG 359088 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||| || ||| | | ||| | |||||| | | ||| | Sbjct 359089 ATGCCTTCCTTATCCTGGATCTTTGCCTTTACATTCTCGATAGTATCAGAAGCCTCAACT 359148 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | |||||| ||||||| || || ||||||||||||||| Sbjct 359149 TCGAGAGTTATGGTTTTCCCGGTTAACGTCTTCACGAAAATCTGCATG 359196 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/149 (74%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | | || || ||||| | ||||||||| || ||||| ||||| ||| Sbjct 358335 CCACCGCGAAGCCTCAAAACCAAATGCAAGGTCGACTCTTTCTGAATATTGTAGTCGGAG 358394 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| || || || || || | ||||| | |||||| ||||||||| Sbjct 358395 AGTGTGCGACCGTCCTCGAGTTGTTTTCCGGCAAAAATTAACCTCTGCTGATCCGGAGGG 358454 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 |||||||| ||||| ||| ||| |||| Sbjct 358455 ATTCCTTCCTTGTC-CTGAATTTTAGCTT 358482 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || || ||||||||||| || |||||| || ||||| |||||| || || || || Sbjct 357909 GTAGATTCCTTTTGAATATTATAATCGGACAAAGTGCGACCGTCCTCGAGTTGTTTTCCA 357968 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGC-TT 131156 ||| | || || | |||||| || ||||| |||||||||||||| ||| ||| || || Sbjct 357969 GCGAAAATCAATCTCTGCTGATCAGGAGGAATTCCTTCTTTGTC-CTGAATTTTAGCTTT 358027 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 || | ||| | || || | | || | || | || | ||| || || |||| ||| Sbjct 358028 GACATTCTCAATTGTGTCCGATGCTTCAACTTCCAATGTGATGGTCTTTCCTGTTAAAGT 358087 Query 131217 TTTTACGAAAATCTGCAT 131234 || ||||| |||||||| Sbjct 358088 CTTGACGAAGATCTGCAT 358105 >seq4241 Length=1709304 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCT 131085 ||||| || | || || ||||||||||||||||||||| | || | ||| || Sbjct 639160 ACTAAGTGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGAAAGAGTTCTGCCGTCTTCC 639219 Query 131086 AGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTG 131145 ||||| ||||| || ||||||||||||| || || || || || || |||||||| || Sbjct 639220 AGCTGTTTGCCAGCAAAGATTAAACGCTGTTGATCAGGTGGAATGCCCTCTTTGTC-CTG 639278 Query 131146 ATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTT 131204 | ||| || |||| | || | ||||| | | ||| | || | ||| | |||||| Sbjct 639279 AATTTTGGCTTTGACGTTTTCTATGGTATCCGAAGCCTCAACTTCAAGGGTGATGGTTTT 639338 Query 131205 ACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || || ||||| |||||||| Sbjct 639339 TCCTGTGAGTGTCTTGACGAAGATCTGCAT 639368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471985393756800