Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq4241 100 2e-16 >seq4241 Length=1709304 Score = 100 bits (110), Expect = 2e-16 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||| |||||||| |||||||| |||| | ||| || |||| |||| ||| Sbjct 639166 TGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGAAAGAGTTCTGCCGTCTTCCAGCTGT 639225 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTT-- 16850 ||||| ||| | || | |||||||| || || | |||||||||||| ||||| Sbjct 639226 TTGCCAGCAAAGATTAAACGCTGTTGATCAGGTGGAATGCCCTCTTTGTCCTGAATTTTG 639285 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||| || || | | | || || | ||| ||| | ||||||||||||||| | Sbjct 639286 GCT--TTGACGTTTTCTATGGTATCCGAAGCCTCAACTTCAAGGGTGATGGTTTTTCCTG 639343 Query 16911 TCAGCGTTTTGACAAAAATCTGCATT 16936 | || || ||||| || ||||||||| Sbjct 639344 TGAGTGTCTTGACGAAGATCTGCATT 639369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405065067588550