Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq4254 248 6e-61 seq3937 131 1e-25 seq3984 125 5e-24 seq4164 118 7e-22 seq4190 104 2e-17 seq4241 91.5 1e-13 >seq4254 Length=3256360 Score = 248 bits (274), Expect = 6e-61 Identities = 297/402 (74%), Gaps = 6/402 (1%) Strand=Plus/Plus Query 6152 ATCGACCACGATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTA 6211 ||||| || ||||||| | ||||||| ||||| ||||| ||||| ||||| ||||| Sbjct 588267 ATCGATTACCATGGGGAGCGTGAACGTTAATCGCAATGTTAGCGACGCTTTCTATCGCTA 588326 Query 6212 CAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCAT 6271 ||| |||||||| ||| || ||||| || || || || || ||||| || || || || Sbjct 588327 CAAGATGCCGCGGATCCAGGCGAAGGTGGAAGGCAAAGGGAATGGTATCAAGACAGTTAT 588386 Query 6272 TGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATA 6331 || |||||| || || || |||||| |||| || || || ||||| ||||| ||||| Sbjct 588387 CGTAAACATGGTAGACGTGGCGAAGGCGATCGGTCGTCCGGCTACCTATCCGACCAAATA 588446 Query 6332 TTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGT 6391 ||||| || || || ||||| |||||||| ||||| ||| ||||| || |||||||| Sbjct 588447 CTTCGGTTGTGAGCTAGGCGCGCAGACGCAATTTGACTTCAAGAACGAACGTTTCATCGT 588506 Query 6392 TAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTT 6451 ||||| || || | | | || ||||| |||||| | || || ||||| || |||| Sbjct 588507 CAACGGCTCACACGATGCCACGAAACTGCAAGACTTATTGGATGGTTTTATCCGAAAGTA 588566 Query 6452 TGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTG---TCTACCAAGAG 6508 || || || | || |||||||| ||||| ||||| || || || || | ||| | Sbjct 588567 CGTTCTTTGCCCGGCTTGCGATAATCCGGAAACCGAACTAATGGTCAGCTCAAAAAAGGG 588626 Query 6509 AAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGG 6550 || | ||||| |||||||||||||| ||||| | ||||| Sbjct 588627 AA---CGATCTCGCAGGGCTGCAAAGCCTGCGGGCATCATGG 588665 >seq3937 Length=228930 Score = 131 bits (144), Expect = 1e-25 Identities = 75/77 (97%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 161713 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 161772 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 161773 GGTCATATTTAGCCTTA 161789 >seq3984 Length=901249 Score = 125 bits (138), Expect = 5e-24 Identities = 74/77 (96%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 126669 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 126728 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 126729 GGTCGTATTTAGCCTTA 126745 >seq4164 Length=697328 Score = 118 bits (130), Expect = 7e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||||||| |||||| ||||| |||||||||||||| ||||| ||| | || || Sbjct 358987 ACCAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCTGACAAGGTGCGTCCATCTTCA 359046 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | || ||||| || || || | || || || || | |||| |||||| || ||| Sbjct 359047 AGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGG 359106 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || ||| ||| ||||||| || |||||| | |||||||| | || || ||||| Sbjct 359107 ATCTTTGCCTTTACATTCTCGATAGTATCAGAAGCCTCAACTTCGAGAGTTATGGTTTTC 359166 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || || || |||||||| ||||||||| Sbjct 359167 CCGGTTAACGTCTTCACGAAAATCTGCATG 359196 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 |||||||||||||| ||||| |||||| || |||| || | ||||||||| || || Sbjct 357915 TCCTTTTGAATATTATAATCGGACAAAGTGCGACCGTCCTCGAGTTGTTTTCCAGCGAAA 357974 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || | | || ||||| | || | |||||||||||| |||||| || |||||| Sbjct 357975 ATCAATCTCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATTTTAGCTTTGACATTC 358034 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | | || || ||||||||| ||||| || || || || || || || || ||| Sbjct 358035 TCAATTGTGTCCGATGCTTCAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTCTTGACG 358094 Query 38307 AATATCTGCAT 38317 || |||||||| Sbjct 358095 AAGATCTGCAT 358105 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | |||||||| | ||| || ||||| ||||||||||| | Sbjct 358105 TACCACCACGGAGACGAAGAACCAAATGCAAAGTTGATTCTTTTTGTATATTGTAATCGG 358164 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | || || |||| || | |||||||||||| || || | | |||||||| | | Sbjct 358165 ATAACGTTCGGCCGTCTTCAAGTTGTTTTCCGGCGAAAATCAATCTCTGTTGATCTGGTG 358224 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| ||||| |||||| || ||||| | | || ||| ||| | Sbjct 358225 GAATACCTTCCTTGTCTTGAATTTTCGCTTTGACATTTTCAATTGTGTCTGATGCTTCGA 358284 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | || || |||||||| || | ||| | || || |||||||| Sbjct 358285 CTTCCAGAGTGATCGTTTTACCAGTGAGTGTTCTTACAAAGATCTGCAT 358333 >seq4190 Length=248667 Score = 104 bits (114), Expect = 2e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||| Sbjct 103805 CTCTCTCTTCAAAGTTCTCTTCAACTTTCCTTCACGGTACTTTTTCGCTATCGGTCTCGT 103864 Query 20007 GGTAATATTTAG 20018 | | |||||||| Sbjct 103865 GATCATATTTAG 103876 Score = 84.2 bits (92), Expect = 1e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19951 CTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTA 20010 ||||| || |||||||||||||||||||| | |||||||||||||||| ||||| | | Sbjct 224563 CTCTTGAACTTTCTTTTCAACTTTCCCTCATGATACTTGTTCGCTATCGATCTCGTGATC 224504 Query 20011 ATATTTAGCCTTATTA 20026 |||||||| ||||| Sbjct 224503 GTATTTAGCGATATTA 224488 Score = 82.4 bits (90), Expect = 5e-11 Identities = 56/63 (89%), Gaps = 5/63 (8%) Strand=Plus/Plus Query 25934 TAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGA 25988 |||||||||||| || |||||||||||||| ||||||||||||||||||||||||| Sbjct 173039 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 173098 Query 25989 CGA 25991 ||| Sbjct 173099 CGA 173101 >seq4241 Length=1709304 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 || || || || ||||| ||| ||||||||||| |||||||| || | | | || Sbjct 639154 CGTAAAACTAAGTGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGAAAGAGTTCTGCCG 639213 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || || | ||||| || ||||| |||| || |||||||| | || | ||| |||||| Sbjct 639214 TCTTCCAGCTGTTTGCCAGCAAAGATTAAACGCTGTTGATCAGGTGGAATGCCCTCTTTG 639273 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 ||| |||||| || || || | | ||||| | |||||||| | || || Sbjct 639274 TCCTGAATTTTGGCTTTGACGTTTTCTATGGTATCCGAAGCCTCAACTTCAAGGGTGATG 639333 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || || | || || ||||| |||||||| Sbjct 639334 GTTTTTCCTGTGAGTGTCTTGACGAAGATCTGCAT 639368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334928238324995