Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3895 98.7 1e-15 seq4254 93.3 5e-14 >seq3895 Length=328041 Score = 98.7 bits (108), Expect = 1e-15 Identities = 176/257 (68%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 63438 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63497 |||| | || ||||| || ||| |||| | ||||| ||||| || || ||||| | Sbjct 4873 GAAATTACCTGGACATCTGCTGATTGTTAGTACAGGCATTGAATAACGTTGGTGAAGCAT 4814 Query 63498 GAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 63557 | ||||| || | | || | | || || || || || ||| ||| ||||| | Sbjct 4813 GTGTAAAGTATCGTCCTGATAAAAAGTTATATGTTTCTATGGCTTTGTCAATATCATTCT 4754 Query 63558 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 63617 ||||| || || || || | ||| ||||| ||||||||||| || || || || | Sbjct 4753 CGTGAATACCGACAGCAACTCTCATCAACATATGCTGAGGTCTCTCCACAATTTTACCAT 4694 Query 63618 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 63677 | ||||||| || ||| | |||| | |||||||| || | |||||| || ||||| Sbjct 4693 TAATTTTCAGTAAATAGCTTCTTTCAAGTGTTTTAAAGCCGATATAGTTATAACTAAAGT 4634 Query 63678 CTCGTTCGTAAATAATA 63694 |||| || || || ||| Sbjct 4633 CTCGATCATATATTATA 4617 Score = 95.1 bits (104), Expect = 2e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 62981 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGA 63040 ||||||||| || || ||||| |||||||||| ||| ||||| ||||| |||| Sbjct 5488 GTATACAATTCTTTAAATTCGTCGCCCCAAACATCAGCCAAGCCAGGGGATTCAGACGGA 5429 Query 63041 CACATCAACGACCAC-TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 63099 ||||| || |||| |||| |||| | ||| |||| |||||| ||||| || ||||| Sbjct 5428 CACATTAAGCTCCACATCTCA-TCATTATACACACGTTCCATAAAAAGATCTGGTATCCA 5370 Query 63100 AAGAGCTATAAATAGATCTCT 63120 |||| | |||||||||||| Sbjct 5369 AAGACCATAAAATAGATCTCT 5349 Score = 86.0 bits (94), Expect = 8e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 62135 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 62194 || || | || |||||| ||| | |||||| ||| || | ||||||||| | | Sbjct 6616 ATGTCTTTATCCCATAAACCTCTGGCAGTTAAATCTCGTAGTAAATGCGGATTGATGATG 6557 Query 62195 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 62254 |||||||||||| ||||| | || | || |||||||| ||||| ||||| | ||| Sbjct 6556 ACAAATTCTCCAGATAATACGCGCCTTATATAGATATTACTCGTATATGGTTCGATAGAT 6497 Query 62255 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 62301 || || || || || || || || || || || || ||||| ||||| Sbjct 6496 TCGTTGTTCCCTAATATCTGTGCCGTCGAAGCCGTTGGCATTGGTGC 6450 Score = 82.4 bits (90), Expect = 1e-10 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 61958 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62017 ||| || |||| || ||||||| |||||| |||||||||||| ||||||| || || Sbjct 6884 GGAACTCCTATGTGAATATTCAAAGATTGCGATTGATCGATGAAAGCTCCCCGATCGGCC 6825 Query 62018 GCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 62077 ||||||| ||||| |||||||| || ||||| | || ||||| | | || | | Sbjct 6824 GCCATTTCAATAATTACTTTTTGTGGTATCTCCCATACGGTCTTATACAATACTTTCAGA 6765 Query 62078 TCTTCTGGAA 62087 || || |||| Sbjct 6764 TCGTCAGGAA 6755 >seq4254 Length=3256360 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/199 (71%), Gaps = 5/199 (3%) Strand=Plus/Plus Query 32944 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATC 33003 ||||| |||||| ||||||||||| || || ||||| ||||| || || || || || | Sbjct 698805 AAAGA--ATACATCTCCGAATGAATATTCTCTATGGCGATTTGGAAACCATAAAAACAGC 698862 Query 33004 TAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTC 33063 || |||| ||| | ||| || || ||||| || |||||||||||| || || | Sbjct 698863 GTGCTTCGGCAATTTTTACCTCCTGACTAAATCTCTCAATTAAATTTTCATTAACAATAC 698922 Query 33064 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA 33123 | || || || ||||| ||||| ||||| ||||| ||| | ||||| | ||| Sbjct 698923 CATCGGAAGCAGCGAAAAATGCCAAGACATGAGAAATAAAGTATCTCTCGTCGGAATTTA 698982 Query 33124 G---TTTATTCCAATCATT 33139 | || || |||||| || Sbjct 698983 GCTTTTCATCCCAATCTTT 699001 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 33218 |||||||| | |||||||| || || | |||||||||||||| | ||| || ||| || Sbjct 699176 ACTTCTTCTATGGTCCAAAAGGAAGCTACAGCCTTTTTATACATTTCCCAAATATCAGGA 699235 Query 33219 TATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATTGGTTCCA 33273 ||||| || ||||| || ||||| | ||||||| ||| | || | |||||||| Sbjct 699236 TATTGTATAGGAAAGATTACAAAGCGATTTGGACTTTCTTGGAGTAGTGGTTCCA 699290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633595209742000