Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq4164 140 3e-28 seq4241 129 5e-25 seq4196 93.3 4e-14 >seq4164 Length=697328 Score = 140 bits (154), Expect = 3e-28 Identities = 173/234 (74%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||| || || || |||||||| | ||||| || | || Sbjct 358105 ATGCAGATCTTCGTCAAGACTTTAACAGGAAAGACCATCACATTGGAAGTTGAAGCATCG 358046 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || ||| | || |||| |||| ||| ||||||||||| ||||| ||||| Sbjct 358045 GACACAATTGAG--AATGTCAAAGCTAAAATTCAG-GACAAAGAAGGAATTCCTCCTGAT 357989 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | | ||||| || || |||||| | || || | ||||||| || |||||| Sbjct 357988 CAGCAGAGATTGATTTTCGCTGGAAAACAACTCGAGGACGGTCGCACTTTGTCCGATTAT 357929 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAAT 25229 ||||||||||| ||||| || || || | || || |||| |||| |||||| Sbjct 357928 AATATTCAAAAGGAATCTACACTTCACCTTGTACTTCGGCTTCGAGGCGGAAAT 357875 Score = 140 bits (154), Expect = 3e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || || || ||||| || ||||| ||| |||| || ||||||| ||| | Sbjct 359198 ACCATGCAGATTTTCGTGAAGACGTTAACCGGGAAAACCATAACTCTCGAAGTTGAGGCT 359139 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||||||| | ||| ||| ||| || || ||||| || ||||| ||| Sbjct 359138 TCTGATACTATCGAGAATGTAAAGGCAAAGATCCAGGATAAGGAAGGCATCCCACCAGAC 359079 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | ||||| || || || || | ||||||| ||||| || |||||| Sbjct 359078 CAGCAGCGTTTGATTTTCGCTGGAAAGCAGCTTGAAGATGGACGCACCTTGTCAGATTAC 359019 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||||| || |||||||| || ||||| || || || || | || |||| Sbjct 359018 AATATTCAGAAGGAATCCACTCTCCATTTGGTTCTCAGATTACGTGGTGGAA 358967 Score = 118 bits (130), Expect = 9e-22 Identities = 157/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||| || | || |||||| | ||||| | ||||| || | || Sbjct 358333 ATGCAGATCTTTGTAAGAACACTCACTGGTAAAACGATCACTCTGGAAGTCGAAGCATCA 358274 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| |||| |||| ||| ||||| ||||| |||||||| || Sbjct 358273 GACACAATTGAAAATGTCA---AAGCGAAAATTCAA-GACAAGGAAGGTATTCCACCAGA 358218 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| | | ||||| ||||| |||||| | ||||| | || || | |||||| Sbjct 358217 TCAACAGAGATTGATTTTCGCCGGAAAACAACTTGAAGACGGCCGAACGTTATCCGATTA 358158 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| ||||||||||| || | ||||| || || Sbjct 358157 CAATATACAAAAAGAATCAACTTTGCATTTGGTTCT 358122 Score = 104 bits (114), Expect = 2e-17 Identities = 137/188 (73%), Gaps = 8/188 (4%) Strand=Plus/Minus Query 25033 CCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGA----GTCACTGAAGCAAAAAATC 25088 |||||||| | |||| ||| |||| ||||| || || |||| |||| |||| || Sbjct 358527 CCATCACATTAGAAGCTGAGGCGTCGGACACAATTGAAAATGTCA---AAGCTAAAATTC 358471 Query 25089 ACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTA 25148 | ||||| ||||| || || || || || ||| || | ||||||||||| |||||| | Sbjct 358470 AG-GACAAGGAAGGAATCCCTCCGGATCAGCAGAGGTTAATTTTTGCCGGAAAACAACTC 358412 Query 25149 GAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTG 25208 || || | |||||| | ||| ||||||||||| ||||| || || | ||||| || Sbjct 358411 GAGGACGGTCGCACACTCTCCGACTACAATATTCAGAAAGAGTCGACCTTGCATTTGGTT 358352 Query 25209 CTAAGGCT 25216 | ||||| Sbjct 358351 TTGAGGCT 358344 >seq4241 Length=1709304 Score = 129 bits (142), Expect = 5e-25 Identities = 169/232 (73%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| | || || ||| ||||||| | ||||| ||| | || Sbjct 639369 AATGCAGATCTTCGTCAAGACACTCACAGGAAAAACCATCACCCTTGAAGTTGAGGCTTC 639310 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || || || || |||| |||| |||| ||| |||||||| || |||||||||| Sbjct 639309 GGATACCATAGAAAACGTCA---AAGCCAAAATTCAG-GACAAAGAGGGCATTCCACCTG 639254 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | |||||||| | || ||||| |||||||| | ||||| | | ||| | ||||| Sbjct 639253 ATCAACAGCGTTTAATCTTTGCTGGCAAACAGCTGGAAGACGGCAGAACTCTTTCCGATT 639194 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||| |||||||| |||||||| || || ||||| || | || | ||||| Sbjct 639193 ACAACATTCAAAAGGAATCCACACTTCACTTAGTTTTACGACTTCGTGGAGG 639142 Score = 113 bits (124), Expect = 4e-20 Identities = 166/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || ||| | || || ||| | ||||| | || ||||| | ||| Sbjct 640385 ATGCAAATCTTTGTGAAAACTCTTACTGGAAAAACAATCACTCTTGAGGTGGAAGCTTCT 640326 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || | || |||| |||| ||| ||||||||||| ||||| || || Sbjct 640325 GACACAATAGAA--AATGTAAAAGCTAAAATTCAG-GACAAAGAAGGTATTCCCCCAGAT 640269 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | || ||||| || || || || ||||||| | ||| | || ||| Sbjct 640268 CAGCAACGTCTGATCTTTGCTGGAAAGCAGTTGGAAGATGGCAGAACTCTTTCTGACTAC 640209 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || |||||||| || || |||||||| || | || ||||||||| Sbjct 640208 AACATCCAGAAAGAATCAACACTCCATTTAGTACTGCGTCTTCGAGGAGGAA 640157 >seq4196 Length=1840941 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/197 (71%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || |||||||| ||||| ||||| | || |||||| ||||||| |||| || ||| | Sbjct 1068580 ACCATGCAAATCTTTGTGAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTAGAGGCC 1068639 Query 25056 TCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 || || || || || |||| |||| || | ||| || || || || |||||||| Sbjct 1068640 TCCGATACCATTGAAAATGTCA---AAGCCAAGATTCAA-GATAAGGAGGGAATTCCACC 1068695 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 || || || || | || || || |||||||| | || |||| |||||| | || Sbjct 1068696 GGATCAGCAACGACTCATCTTCGCTGGCAAACAGCTGGAGGATGGACGCACTCTCTCAGA 1068755 Query 25172 TTACAATATTCAAAAAG 25188 ||||||||| || |||| Sbjct 1068756 TTACAATATCCAGAAAG 1068772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433303468895675