Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq4254 158 1e-33 seq4296 116 4e-21 seq4292 116 4e-21 >seq4254 Length=3256360 Score = 158 bits (174), Expect = 1e-33 Identities = 178/233 (76%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 93114 CTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCT 93173 |||| |||||||| || | ||||||||||| || | || || | | ||||||||||| Sbjct 698371 CTTCATCTCGTGAGATGAGTTCATTGCTGAAAGTAAGGCCAGGCATGATTCCTCGTTTCT 698430 Query 93174 TGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATG 93233 | | ||||||||| | ||| |||||||| |||||| |||||||| || |||||||| | Sbjct 698431 TCAACCAAAATATCGCAGCGAAACTACCGCTAAAAAAAATACCTTCAACCGCTGCAAAAG 698490 Query 93234 CCACAATACGTTCGGCAAAATTTGCGGAAT-TACTG-CTGATCCATTTTAAAGCCCAATC 93291 | || |||||||| | |||| || | | | | || ||||||| ||||| ||||||| Sbjct 698491 CAACTATACGTTCAG-GAAATGTG-GCACTCTCGTGATTGATCCAGTTTAAGGCCCAATT 698548 Query 93292 GGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 || ||||| || |||||| ||||| ||||| || ||||||| | |||||| Sbjct 698549 AGCCTTTTTTCCAACACAAGGAAGTGTCTCGATCGCATTAAATAAGAAATCTC 698601 Score = 123 bits (136), Expect = 3e-23 Identities = 155/212 (73%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || || || ||||||| | ||||||||| || ||||| | |||||| || || |||||| Sbjct 698787 ATATAAGTTTCGATTAGTAAAGAATACATCTCCGAATGAATATTCTCTATGGCGATTTGG 698846 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || || ||||| | ||||| | || | || || ||| ||||||||| | | | Sbjct 698847 AAACCATAAAAACAGCGTGCTTCGGCAATTTTTACCTCCTGACTAAATCTCTCAATTAAA 698906 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 |||||||| || ||||||||||| || || ||||| ||||| | ||| ||||| | | Sbjct 698907 TTTTCATTAACAATACCATCGGAAGCAGCGAAAAATGCCAAGACATGAGAAATAAAGTAT 698966 Query 93542 TTCTCATCATCTTTAAGCTT---ATCCCAATC 93570 |||| || || ||||| ||||||||| Sbjct 698967 CTCTCGTCGGAATTTAGCTTTTCATCCCAATC 698998 >seq4296 Length=1824142 Score = 116 bits (128), Expect = 4e-21 Identities = 82/91 (90%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||| |||||||||||||||| || |||||||||| Sbjct 583943 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGATCTGGTTCCCATCTGGGAGCGTGG 584002 Query 126327 GTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||||||||| | |||||| || || Sbjct 584003 GTTCGAACCCCACACTTAGCAAATTTTTTTT 584033 >seq4292 Length=3918663 Score = 116 bits (128), Expect = 4e-21 Identities = 82/91 (90%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||| ||||| |||||||||| || |||||||||| Sbjct 3597497 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCATCTGGGAGCGTGG 3597438 Query 126327 GTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||||||||||| |||| | || || Sbjct 3597437 GTTCGAACCCCACACCTGGCAAACTTTTTTT 3597407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556828467269800