Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq4241 178 2e-39 seq4164 156 8e-33 seq4196 149 1e-30 >seq4241 Length=1709304 Score = 178 bits (196), Expect = 2e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || || || ||||| || ||||| || ||||| ||||| |||||||| Sbjct 639142 CCTCCACGAAGTCGTAAAACTAAGTGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGAA 639201 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || || ||||| | ||| || || || || || | | ||||| || |||||| Sbjct 639202 AGAGTTCTGCCGTCTTCCAGCTGTTTGCCAGCAAAGATTAAACGCTGTTGATCAGGTGGA 639261 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| || ||||| ||||| || || |||||| || ||||| || | | || ||| Sbjct 639262 ATGCCCTCTTTGTCCTGAATTTTGGCTTTGACGTTTTCTATGGTATCCGAAGCCTCAACT 639321 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | ||||||||||||||| ||||| ||||||||||| ||||||||| Sbjct 639322 TCAAGGGTGATGGTTTTTCCTGTGAGTGTCTTGACGAAGATCTGCATT 639369 Score = 109 bits (120), Expect = 1e-18 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 || || ||||||||||||||||| |||||||||||||| || || || || || ||| Sbjct 640036 TGCTGATCGGGTGGAATGCCTTCTTTGTCTTGAATCTTAGCTTTTACATTTTCTATAGTG 640095 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 |||| | ||| ||||| | ||||||||||| || ||||| ||||| || || |||||| Sbjct 640096 TCTGAAGCTTCGACTTCGAGAGTGATGGTTTTGCCTGTGAGAGTCTTCACAAAGATCTGC 640155 Query 68460 ATT 68462 ||| Sbjct 640156 ATT 640158 >seq4164 Length=697328 Score = 156 bits (172), Expect = 8e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 68231 ATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATC 68290 |||||| || ||||| || | ||| | ||| || || || || ||||| || |||||||| Sbjct 357875 ATTTCCGCCTCGAAGCCGAAGTACAAGGTGAAGTGTAGATTCCTTTTGAATATTATAATC 357934 Query 68291 GGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGG 68350 ||| | || | || || || | || || || ||||| || | ||| || || || || Sbjct 357935 GGACAAAGTGCGACCGTCCTCGAGTTGTTTTCCAGCGAAAATCAATCTCTGCTGATCAGG 357994 Query 68351 TGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTC 68410 ||||| ||||| ||||| ||||| || || ||||| ||| || ||||| | || ||| Sbjct 357995 AGGAATTCCTTCTTTGTCCTGAATTTTAGCTTTGACATTCTCAATTGTGTCCGATGCTTC 358054 Query 68411 TACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| |||||||| ||||| || | ||||||||||| |||||||| Sbjct 358055 AACTTCCAATGTGATGGTCTTTCCTGTTAAAGTCTTGACGAAGATCTGCAT 358105 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | ||||| || | || || |||||||| || || |||||||| Sbjct 358107 CCACCACGGAGACGAAGAACCAAATGCAAAGTTGATTCTTTTTGTATATTGTAATCGGAT 358166 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || ||||| | || || |||||||| || | ||| ||||| || |||||| Sbjct 358167 AACGTTCGGCCGTCTTCAAGTTGTTTTCCGGCGAAAATCAATCTCTGTTGATCTGGTGGA 358226 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||||||||| || || ||||| || || ||||||| || ||| ||| Sbjct 358227 ATACCTTCCTTGTCTTGAATTTTCGCTTTGACATTTTCAATTGTGTCTGATGCTTCGACT 358286 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||| ||||| || ||||| || | || || |||||||| Sbjct 358287 TCCAGAGTGATCGTTTTACCAGTGAGTGTTCTTACAAAGATCTGCAT 358333 Score = 131 bits (144), Expect = 3e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| || || ||||| || || || || || ||||| || | || | |||||||| Sbjct 358987 ACCAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCTGACAAGGTGCGTCCATCTTCA 359046 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || ||||| || | | || ||||| ||||| ||||||||||| || || Sbjct 359047 AGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGG 359106 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||||||||| || |||||| || || | | || ||||| | || |||||||| Sbjct 359107 ATCTTTGCCTTTACATTCTCGATAGTATCAGAAGCCTCAACTTCGAGAGTTATGGTTTTC 359166 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATGCT 68467 || || | ||||| ||||| |||||||| |||| Sbjct 359167 CCGGTTAACGTCTTCACGAAAATCTGCATGGTGCT 359201 Score = 125 bits (138), Expect = 1e-23 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 68306 ATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTT 68365 |||||| | || || || ||||| || | ||||| || || ||||| || |||||||| Sbjct 358812 ATCTTCAAGTTGTTTTCCAGCGAAGATCAACCTTTGCTGATCTGGTGGGATACCTTCCTT 358871 Query 68366 GTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGAT 68425 ||||||||| || || ||||| || || || |||| | ||||||||||| ||||| Sbjct 358872 GTCTTGAATTTTCGCTTTGACATTTTCAATTGTATCTGAAGCCTCTACTTCCAAAGTGAT 358931 Query 68426 GGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||||||||| | ||| ||||| || ||||||||| Sbjct 358932 GGTTTTTCCCGTTAAGGTTTTGACAAAAATCTGCATT 358968 Score = 104 bits (114), Expect = 4e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| | ||| ||||| || | || |||||||| || || || || |||||| Sbjct 358335 CCACCGCGAAGCCTCAAAACCAAATGCAAGGTCGACTCTTTCTGAATATTGTAGTCGGAG 358394 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | || || || | || || ||||| || || | || || || || || || Sbjct 358395 AGTGTGCGACCGTCCTCGAGTTGTTTTCCGGCAAAAATTAACCTCTGCTGATCCGGAGGG 358454 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| ||||| || || ||||| || || ||||| | | || || Sbjct 358455 ATTCCTTCCTTGTCCTGAATTTTAGCTTTGACATTTTCAATTGTGTCCGACGCCTCAGCT 358514 Query 68415 TCCAAGGTGATGGTTTT 68431 || || |||||||| || Sbjct 358515 TCTAATGTGATGGTCTT 358531 >seq4196 Length=1840941 Score = 149 bits (164), Expect = 1e-30 Identities = 147/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331 |||| ||||| || ||||| ||||| || | ||||| || | ||| || || ||||| | Sbjct 1068772 CTTTCTGGATATTGTAATCTGAGAGAGTGCGTCCATCCTCCAGCTGTTTGCCAGCGAAGA 1068713 Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391 |||||| ||| || || |||||||| || ||||| ||||||||||| || ||||| | Sbjct 1068712 TGAGTCGTTGCTGATCCGGTGGAATTCCCTCCTTATCTTGAATCTTGGCTTTGACATTTT 1068653 Query 68392 CGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 | ||||| || | | ||||| || | |||||||||||| |||||||||||||| || | Sbjct 1068652 CAATGGTATCGGAGGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTCACAA 1068593 Query 68452 ATATCTGCAT 68461 | || ||||| Sbjct 1068592 AGATTTGCAT 1068583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921568888299400