Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq4296 100 3e-16 >seq4296 Length=1824142 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 20240 CCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACT 20299 |||| |||||||||| ||| ||||| || |||||||| || |||||||| || ||| Sbjct 1063280 CCAGCGACATGAGCAATCATGTAAGTCAACAGGGAATACGATGCTATGTTAAATGGCACT 1063221 Query 20300 CCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACA 20359 ||||||||||| ||| | || || || || || || | || |||| |||| Sbjct 1063220 CCCAAACCCATATCTGCACTTCTTTGGTAAAGTTGCGCAGATAATTCCCCGTTGTTTACA 1063161 Query 20360 TAAAATTG-ACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTT 20418 |||||||| ||| || | ||||| || || | |||||| | | ||| | ||| || Sbjct 1063160 TAAAATTGTACA-AAAACATGACATGGTGGCAATGCCATCTTTGGAATGTCAGACGGATT 1063102 Query 20419 CCACGCACACATAATGATTCTTCTATCGTGCGGA 20452 ||| ||| |||| || || | ||| |||| |||| Sbjct 1063101 CCAAGCAGACATTATAATACGTCTGTCGTCCGGA 1063068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441347172791800