Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq3392 100 2e-16 seq4644 98.7 8e-16 seq1567 93.3 3e-14 >seq3392 Length=1242 Score = 100 bits (110), Expect = 2e-16 Identities = 84/99 (85%), Gaps = 3/99 (3%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG-TAAGATCTAAGGAAC 114390 |||||||| |||||||||||||||| ||||||||||||| || | || |||||| |||| Sbjct 630 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGTACAATCTAATGAAC 689 Query 114391 CAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 || ||||||| || ||||||||||| ||| || ||||| Sbjct 690 CATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 728 Score = 100 bits (110), Expect = 2e-16 Identities = 84/99 (85%), Gaps = 3/99 (3%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG-TAAGATCTAAGGAAC 115587 |||||||| |||||||||||||||| ||||||||||||| || | || |||||| |||| Sbjct 630 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGTACAATCTAATGAAC 689 Query 115588 CAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 || ||||||| || ||||||||||| ||| || ||||| Sbjct 690 CATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 728 >seq4644 Length=1011 Score = 98.7 bits (108), Expect = 8e-16 Identities = 84/100 (84%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || | || |||||| ||| Sbjct 459 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACAATCTAATGAA 518 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 519 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 558 Score = 98.7 bits (108), Expect = 8e-16 Identities = 84/100 (84%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || | || |||||| ||| Sbjct 459 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACAATCTAATGAA 518 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 519 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 558 >seq1567 Length=1073 Score = 93.3 bits (102), Expect = 3e-14 Identities = 84/101 (83%), Gaps = 5/101 (5%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAA--CTGAGTAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || ||| |||||| ||| Sbjct 427 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACAATCTAATGAA 486 Query 114390 CCAAAACTGATATATTG-AGCCATTCGTGGTATCGTCTTAA 114429 ||| ||||||| || || ||||||||| ||| || ||||| Sbjct 487 CCATAACTGATTTAATGTAGCCATTCGCGGTTTCACCTTAA 527 Score = 93.3 bits (102), Expect = 3e-14 Identities = 84/101 (83%), Gaps = 5/101 (5%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAA--CTGAGTAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || ||| |||||| ||| Sbjct 427 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACAATCTAATGAA 486 Query 115587 CCAAAACTGATATATTG-AGCCATTCGTGGTATCGTCTTAA 115626 ||| ||||||| || || ||||||||| ||| || ||||| Sbjct 487 CCATAACTGATTTAATGTAGCCATTCGCGGTTTCACCTTAA 527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397039921925290