Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq4164 141 2e-28 seq4241 134 3e-26 seq4247 95.1 3e-14 >seq4164 Length=697328 Score = 141 bits (156), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 288243 ATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTC 288302 || ||| || || || | |||||| || |||| || ||| ||||| |||||||| || Sbjct 357875 ATTTCCGCCTCGAAGCCGAAGTACAAGGTGAAGTGTAGATTCCTTTTGAATATTATAATC 357934 Query 288303 GGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATC 288362 || | ||||| ||||| || | ||||||||| ||||| |||| | ||| ||| | Sbjct 357935 GGACAAAGTGCGACCGTCCTCGAGTTGTTTTCCAGCGAAAATCAATCTCTGCTGATCAGG 357994 Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || ||||||||||| ||||| ||||| ||||| || || || || | || | ||| Sbjct 357995 AGGAATTCCTTCTTTGTCCTGAATTTTAGCTTTGACATTCTCAATTGTGTCCGATGCTTC 358054 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||| ||||| || || | |||||||||||| |||||||| Sbjct 358055 AACTTCCAATGTGATGGTCTTTCCTGTTAAAGTCTTGACGAAGATCTGCAT 358105 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || | ||| | || ||||||||| ||||| || |||| Sbjct 358107 CCACCACGGAGACGAAGAACCAAATGCAAAGTTGATTCTTTTTGTATATTGTAATCGGAT 358166 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||| || |||||||| | ||||||||| ||||| |||| | ||||||| ||| Sbjct 358167 AACGTTCGGCCGTCTTCAAGTTGTTTTCCGGCGAAAATCAATCTCTGTTGATCTGGTGGA 358226 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || || ||||||||||| || ||||| || | || | ||| ||| Sbjct 358227 ATACCTTCCTTGTCTTGAATTTTCGCTTTGACATTTTCAATTGTGTCTGATGCTTCGACT 358286 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || |||||||| || || || || || | || || |||||||| Sbjct 358287 TCCAGAGTGATCGTTTTACCAGTGAGTGTTCTTACAAAGATCTGCAT 358333 Score = 127 bits (140), Expect = 5e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || | ||| || || | ||| | ||| ||| || || ||||| || || | Sbjct 358968 TCCACCACGTAATCTGAGAACCAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCTGA 359027 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | |||||||| ||||| | || ||||| ||||| |||| |||||| || ||| Sbjct 359028 CAAGGTGCGTCCATCTTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTGG 359087 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| ||||| ||||||||||| || || || || || || |||| ||| | || || Sbjct 359088 GATGCCTTCCTTATCCTGGATCTTTGCCTTTACATTCTCGATAGTATCAGAAGCCTCAAC 359147 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||| || || || |||||||| | ||||| ||||| |||||||| Sbjct 359148 TTCGAGAGTTATGGTTTTCCCGGTTAACGTCTTCACGAAAATCTGCAT 359195 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || || | || | ||| | || ||||| || ||||| ||||||| | Sbjct 358335 CCACCGCGAAGCCTCAAAACCAAATGCAAGGTCGACTCTTTCTGAATATTGTAGTCGGAG 358394 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | ||||||||| || || || | | ||| ||| ||| Sbjct 358395 AGTGTGCGACCGTCCTCGAGTTGTTTTCCGGCAAAAATTAACCTCTGCTGATCCGGAGGG 358454 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || ||||| ||||| ||||| || ||||| || | || || || || Sbjct 358455 ATTCCTTCCTTGTCCTGAATTTTAGCTTTGACATTTTCAATTGTGTCCGACGCCTCAGCT 358514 Query 288427 TCGAGCGTGATCGTCTT 288443 || | ||||| ||||| Sbjct 358515 TCTAATGTGATGGTCTT 358531 Score = 93.3 bits (102), Expect = 1e-13 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 288319 TCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTA 288378 ||||| | ||||||||| |||||||||| | || ||| |||||| ||||| || Sbjct 358813 TCTTCAAGTTGTTTTCCAGCGAAGATCAACCTTTGCTGATCTGGTGGGATACCTTCCTTG 358872 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 || || ||||||||||| || ||||| || | ||| | |||||||| | ||||| Sbjct 358873 TCTTGAATTTTCGCTTTGACATTTTCAATTGTATCTGAAGCCTCTACTTCCAAAGTGATG 358932 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || | || ||||| || ||||||||| Sbjct 358933 GTTTTTCCCGTTAAGGTTTTGACAAAAATCTGCATT 358968 >seq4241 Length=1709304 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| ||| ||||| || || || |||| || || | |||||||| | ||| Sbjct 639166 TGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGAAAGAGTTCTGCCGTCTTCCAGCTGT 639225 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || ||||| | |||||||||| | ||| || || ||||| ||||| ||||| Sbjct 639226 TTGCCAGCAAAGATTAAACGCTGTTGATCAGGTGGAATGCCCTCTTTGTCCTGAATTTTG 639285 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||| ||||||||||| | ||| | || ||||| || ||||| || || || || Sbjct 639286 GCTTTGACGTTTTCTATGGTATCCGAAGCCTCAACTTCAAGGGTGATGGTTTTTCCTGTG 639345 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || ||||||||||| ||||||||| Sbjct 639346 AGTGTCTTGACGAAGATCTGCATT 639369 Score = 118 bits (130), Expect = 3e-21 Identities = 168/235 (71%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || || | ||||| | ||| | || |||||| ||||| || ||||| | Sbjct 640158 TCCTCCTCGAAGACGCAGTACTAAATGGAGTGTTGATTCTTTCTGGATGTTGTAGTCAGA 640217 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || | || ||||| || || ||||| || ||||||||||| || || |||||| Sbjct 640218 AAGAGTTCTGCCATCTTCCAACTGCTTTCCAGCAAAGATCAGACGTTGCTG---ATCTGG 640274 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | || |||||||| ||||| ||||| ||||| || |||||||| | || | ||| Sbjct 640275 GGGAATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTC 640334 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || || ||||| || || || || ||||| || || || || ||||| ||| Sbjct 640335 CACCTCAAGAGTGATTGTTTTTCCAGTAAGAGTTTTCACAAAGATTTGCATGATG 640389 >seq4247 Length=3167485 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 || || |||||||| |||||||||||||| ||||| || | ||| || || || || Sbjct 1136347 CCCTCCTTATCCTGAATTTTCGCTTTCACATTTTCAATCGTATCCGACGCCTCGACCTCA 1136288 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 || ||||| |||||||| || |||||||| || || ||||||||||| Sbjct 1136287 AGGGTGATGGTCTTCCCTGTAAGAGTCTTCACAAAAATCTGCATTAT 1136241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179584193974310