Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq4196 107 2e-18 seq4164 98.7 1e-15 seq3884 95.1 1e-14 seq4241 93.3 5e-14 seq3778 89.7 6e-13 seq4142 87.8 2e-12 seq4080 84.2 2e-11 >seq4196 Length=1840941 Score = 107 bits (118), Expect = 2e-18 Identities = 146/200 (73%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 42011 TGTGCTCTCCTTT-TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTAC 42069 ||| | | ||||| || ||||||||||| | ||||| || | || || ||||| || | Sbjct 1068781 TGTTCGCACCTTTCTGGATATTGTAATCTGAGAGAGTGCGTCCATCCTCCAGCTGTTTGC 1068722 Query 42070 CAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-T 42128 ||||||| |||||||| ||||| || | ||| | | |||||| | | ||| | || | | Sbjct 1068721 CAGCGAAGATGAGTCGTTGCTGATCCGGTGGAATTCCCTCCTTAT-CTTGAATCTTGGCT 1068663 Query 42129 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGC 42188 |||| | | | || ||| | || || |||| ||||||||||| ||||| || Sbjct 1068662 TTGACATTTTCAATGGTATCGGAGGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGG 1068603 Query 42189 GTCTTTACAAAGATTTGCAT 42208 ||||| |||||||||||||| Sbjct 1068602 GTCTTCACAAAGATTTGCAT 1068583 >seq4164 Length=697328 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||| | ||| ||||| |||||||||||||| | || || || | || || Sbjct 358987 ACCAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCTGACAAGGTGCGTCCATCTTCA 359046 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| |||||||| || | ||||||||||| | ||| | || ||||| ||| | Sbjct 359047 AGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGG 359106 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || ||| || | || | | || || | || || |||| || |||||||| Sbjct 359107 ATCTTTGCCTTTACATTCTCGATAGTATCAGAAGCCTCAACTTCGAGAGTTATGGTTTTC 359166 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||| |||||| || || || ||||| Sbjct 359167 CCGGTTAACGTCTTCACGAAAATCTGCAT 359195 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||||||||| ||||| | || ||| || |||| || || || || |||||||| Sbjct 357915 TCCTTTTGAATATTATAATCGGACAAAGTGCGACCGTCCTCGAGTTGTTTTCCAGCGAAA 357974 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || | || |||||| || | || | | || |||||| ||| |||| | ||||| | Sbjct 357975 ATCAATCTCTGCTGATCAGGAGGAATTCCTTCTTTGTCC-TGAATTTTAGCTTTGACATT 358033 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| | ||| || || | |||||||| || || |||| ||||| || Sbjct 358034 CTCAATTGTGTCCGATGCTTCAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTCTTGAC 358093 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 358094 GAAGATCTGCAT 358105 >seq3884 Length=1137270 Score = 95.1 bits (104), Expect = 1e-14 Identities = 71/82 (87%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||| || ||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 923887 AAAAATGATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 923946 Query 57057 CTCACCACTATACTACCGAGGA 57078 || ||||||||||||||||||| Sbjct 923947 CTAACCACTATACTACCGAGGA 923968 >seq4241 Length=1709304 Score = 93.3 bits (102), Expect = 5e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | || || || || || | |||| ||||||||||| |||||||| | Sbjct 639141 ACCTCCACGAAGTCGTAAAACTAAGTGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGA 639200 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| | |||| || ||||| || ||||| || || | ||||| || || | ||| Sbjct 639201 AAGAGTTCTGCCGTCTTCCAGCTGTTTGCCAGCAAAGATTAAACGCTGTTGATCAGGTGG 639260 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | || ||| |||||| ||| |||| | ||||| | | | || || | || | Sbjct 639261 AATGCCCTCTTTGTCC-TGAATTTTGGCTTTGACGTTTTCTATGGTATCCGAAGCCTCAA 639319 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 | || | ||||||||||| || || || ||||| || ||||| |||||| Sbjct 639320 CTTCAAGGGTGATGGTTTTTCCTGTGAGTGTCTTGACGAAGATCTGCATT 639369 >seq3778 Length=435428 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 || ||||| ||||| || | | |||||||||| ||||||||||||||||||||| | Sbjct 425695 ATAAAAAAAGGTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 425636 Query 57055 TACTCACCACTATACTACCGAGGA 57078 |||| |||||||||||| |||||| Sbjct 425635 TACTAACCACTATACTATCGAGGA 425612 >seq4142 Length=510391 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 503312 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 503253 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 503252 ATACTATCGAGGA 503240 >seq4080 Length=441467 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||| ||||||||||||||||||||| ||||| |||||||||||| |||||| Sbjct 282376 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTATACTATCGAGGA 282434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543181259706800