Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq4164 149 6e-31 seq4241 89.7 5e-13 seq3895 87.8 2e-12 >seq4164 Length=697328 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || ||||| || || | ||| | || ||||| || ||||| |||||||||| Sbjct 358969 CCACCACGTAATCTGAGAACCAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCTGAC 359028 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| | |||||||||||||| || || |||| | ||||||||||| || || Sbjct 359029 AAGGTGCGTCCATCTTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTGGG 359088 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || || || || ||| ||||||| ||| | |||||| || || ||| Sbjct 359089 ATGCCTTCCTTATCCTGGATCTTTGCCTTTACATTCTCGATAGTATCAGAAGCCTCAACT 359148 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||||| ||| || ||||| || || || |||||||| ||||| Sbjct 359149 TCGAGAGTTATGGTTTTCCCGGTTAACGTCTTCACGAAAATCTGCAT 359195 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| || | | ||| || || |||| || ||||| |||||||| || ||||| | Sbjct 357879 CCGCCTCGAAGCCGAAGTACAAGGTGAAGTGTAGATTCCTTTTGAATATTATAATCGGAC 357938 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| || || || || || || |||| | | |||||| || |||||| Sbjct 357939 AAAGTGCGACCGTCCTCGAGTTGTTTTCCAGCGAAAATCAATCTCTGCTGATCAGGAGGA 357998 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||||| || || | |||| ||||| ||| ||| | ||| || || || || Sbjct 357999 ATTCCTTCTTTGTCCTG-AATTTTAGCTTTGACATTCTCAATTGTGTCCGATGCTTCAAC 358057 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | |||||| || || ||||| || ||||| || ||||| Sbjct 358058 TTCCAATGTGATGGTCTTTCCTGTTAAAGTCTTGACGAAGATCTGCAT 358105 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||| | || ||||||||||| || |||||||| | | || || |||| Sbjct 358121 AAGAACCAAATGCAAAGTTGATTCTTTTTGTATATTGTAATCGGATAACGTTCGGCCGTC 358180 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||| || || ||||| |||| | | ||| || || || ||||| ||||| || || Sbjct 358181 TTCAAGTTGTTTTCCGGCGAAAATCAATCTCTGTTGATCTGGTGGAATACCTTCCTTGTC 358240 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| | |||| ||||| ||| || | ||| || || || ||||| | ||| | | Sbjct 358241 TTG-AATTTTCGCTTTGACATTTTCAATTGTGTCTGATGCTTCGACTTCCAGAGTGATCG 358299 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || || || | ||| |||| || || ||||| Sbjct 358300 TTTTACCAGTGAGTGTTCTTACAAAGATCTGCAT 358333 >seq4241 Length=1709304 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| |||| || ||||| ||||||||||||||||| | | || | ||||||| Sbjct 639160 ACTAAGTGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGAAAGAGTTCTGCCGTCTTCC 639219 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 ||||| ||||| ||| | || | ||||| || || || ||||| || ||||| || || Sbjct 639220 AGCTGTTTGCCAGCAAAGATTAAACGCTGTTGATCAGGTGGAATGCCCTCTTTGTCCTG- 639278 Query 64355 ATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 | |||| ||||| || || | ||||| || || ||||| | || | ||| || Sbjct 639279 AATTTTGGCTTTGACGTTTTCTATGGTATCCGAAGCCTCAACTTCAAGGGTGATGGTTTT 639338 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || | || || ||||| || |||||| Sbjct 639339 TCCTGTGAGTGTCTTGACGAAGATCTGCATT 639369 >seq3895 Length=328041 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 154586 AGACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCA 154645 ||| ||||||||||| || || | |||||||| ||| ||||| |||||||| | ||| Sbjct 5835 AGAAGCCAAGTTGCATACAGCGACTTCTTCAGGACTGGAGTATTCGACAATTTCGGTGCA 5776 Query 154646 CAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTC 154705 || || |||||| || ||||| || | || ||||||||||| || || || Sbjct 5775 TAAGTTGCTGCATTTGATCGTGCCTAGATGTTGATGATTCGATTTTCGATTACAATGATC 5716 Query 154706 TTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTG 154741 |||||| | || || || || || ||||| ||||| Sbjct 5715 TTTGTAAAGCATATAAGGTGTTCCAGTTTCTACTTG 5680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499615789373800