Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4241 107 2e-18 seq4164 93.3 4e-14 >seq4241 Length=1709304 Score = 107 bits (118), Expect = 2e-18 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||||| |||||||| | |||| || || || ||||||||||| Sbjct 640159 CCTCCTCGAAGACGCAGTACTAAATGGAGTGTTGATTCTTTCTGGATGTTGTAGTCAGAA 640218 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| | || | || || | || || || | | |||| ||||| || || || || || Sbjct 640219 AGAGTTCTGCCA-TCTTCCAACTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGGGG 640277 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||||||||| ||| |||| | ||||| | ||| | ||||| | | |||| Sbjct 640278 AATACCTTCTTTGTC-CTGAATTTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCCA 640336 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | ||||| ||||| |||||||| ||||| || |||||| Sbjct 640337 CCTCAAGAGTGATTGTTTTTCCAGTAAGAGTTTTCACAAAGATTTGCATG 640386 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 || |||||||| || | | || ||||||||||||||||| ||| | ||| | | Sbjct 639154 CGTAAAACTAAGTGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGAAAGAGTTCTGCCG 639213 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || || ||||| || | | |||||| ||||||||| || || || || || |||||| Sbjct 639214 TCTTCCAGCTGTTTGCCAGCAAAGATTAAACGCTGTTGATCAGGTGGAATGCCCTCTTTG 639273 Query 138520 TCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || ||| |||| | ||| | | ||| | ||| || | | ||| || || | || | Sbjct 639274 TC-CTGAATTTTGGCTTTGACGTTTTCTATGGTATCCGAAGCCTCAACTTCAAGGGTGAT 639332 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || || || || || || || |||||||| Sbjct 639333 GGTTTTTCCTGTGAGTGTCTTGACGAAGATCTGCAT 639368 >seq4164 Length=697328 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| ||||| | |||| || ||||| || ||||| ||| Sbjct 358107 CCACCACGGAGACGAAGAACCAAATGCAAAGTTGATTCTTTTTGTATATTGTAATCGGAT 358166 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || |||||||| |||| | || | | |||||| || || || Sbjct 358167 AACGTTCGGCCGTCTTCAAGTTGTTTTCCGGCGAAAATCAATCTCTGTTGATCTGGTGGA 358226 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| ||||| ||| |||| | ||| | | ||| | ||||| | | || || Sbjct 358227 ATACCTTCCTTGTCT-TGAATTTTCGCTTTGACATTTTCAATTGTGTCTGATGCTTCGAC 358285 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||||||| || ||| ||||||| |||||||| Sbjct 358286 TTCCAGAGTGATCGTTTTACCAGTGAGTGTTCTTACAAAGATCTGCAT 358333 Score = 91.5 bits (100), Expect = 1e-13 Identities = 105/138 (76%), Gaps = 5/138 (4%) Strand=Plus/Plus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA--G 138459 |||||| ||||| | | | ||||| || ||||| ||||||||| | ||| |||| | Sbjct 358349 CAAAACCAAATGCAAGGTCGACTCTTTCTGAATATTGTAGTCGG--AGAGTGTGCGACCG 358406 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 |||||||||||||| |||| | | |||| | ||| || |||||||| || ||||| ||| Sbjct 358407 TCCTCGAGTTGTTTTCCGGCAAAAATTAACCTCTGCTGATCCGGAGGGATTCCTTCCTTG 358466 Query 138520 TCGGTGATTTTTTGTTTT 138537 || ||| |||| | ||| Sbjct 358467 TC-CTGAATTTTAGCTTT 358483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496233585764400