Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq4241 143 2e-29 seq4164 118 8e-22 seq4196 95.1 9e-15 >seq4241 Length=1709304 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || || | || ||||||||| ||||| || || || ||||| |||||||||||| Sbjct 639142 CCTCCACGAAGTCGTAAAACTAAGTGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGAA 639201 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| ||||||| | ||||||||||| | || ||||||||||| || |||| Sbjct 639202 AGAGTTCTGCCGTCTTCCAGCTGTTTGCCAGCAAAGATTAAACGCTGTTGATCAGGTGGA 639261 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || || ||||| ||||||| ||| || ||||||| ||||| | || || Sbjct 639262 ATGCCCTCTTTGTCCTGAATTTTGGCTTTGACGTTTTCTATGGTATCCGAAGCCTCAACT 639321 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| |||||||| ||||| || || || || || || ||||| Sbjct 639322 TCAAGGGTGATGGTTTTTCCTGTGAGTGTCTTGACGAAGATCTGCAT 639368 Score = 95.1 bits (104), Expect = 9e-15 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || || | || ||||||||| ||||| || || |||||||| |||||||||||| Sbjct 639370 CCTCCACGAAGTCGTAAAACTAAGTGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAA 639429 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTG 15059 ||| |||| ||||||| | |||||||||||| | || |||||||| || Sbjct 639430 AGAGTTCTGCCGTCTTCCAGTTGTTTGCCAGCAAAGATTAAACGCTGCTG 639479 >seq4164 Length=697328 Score = 118 bits (130), Expect = 8e-22 Identities = 155/213 (73%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGTCT 15024 ||| ||||| | || || ||||||||||| ||||||||| || || ||| ||||| Sbjct 358124 AACCAAATGCAAAGTTGATTCTTTTTGTATATTGTAATCG--GATAACGTTCGGCCGTCT 358181 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | |||||| || ||| | ||||| | |||||| || |||||| ||||||||||| Sbjct 358182 TCAAGTTGTTTTCCGGCGAAAATCAATCTCTGTTGATCTGGTGGAATACCTTCCTTGTCT 358241 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 |||||| ||| ||| |||| || || || ||| || || | || || ||| Sbjct 358242 TGAATTTTCGCTTTGACATTTTCAATTGTGTCTGATGCTTCGACTTCCAGAGTGATCGTT 358301 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || || ||| ||||||| || |||||| Sbjct 358302 TTACCAGTGAGTGTTCTTACAAAGATCTGCATA 358334 Score = 96.9 bits (106), Expect = 2e-15 Identities = 175/251 (70%), Gaps = 10/251 (4%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || ||||| | ||| ||||| || || || || || || || |||||||| || Sbjct 358969 CCACCACGTAATCTGAGAACCAAATGGAGAGTGGATTCCTTCTGAATATTGTAATC--TG 359026 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || || | ||||| | || || |||||| | ||||||||||| ||||| || Sbjct 359027 ACAAGGTGCGTCCATCTTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTG 359086 Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 | || |||||||| || || ||||| |||||| | || |||||||| | || Sbjct 359087 GGATGCCTTCCTTATCCTGGATCTTTGC-CTTTACATTCTCGATAGTATCAGAAGCCTCA 359145 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT----ATTTGA 15182 || || | || |||||||| || || | || || || ||||| ||||| | || Sbjct 359146 ACTTCGAGAGTTATGGTTTTCCCGGTTAACGTCTTCACGAAAATCTGCATGGTGCTCTGG 359205 Query 15183 AATAAATTTTT 15193 |||||| |||| Sbjct 359206 AATAAAATTTT 359216 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| ||||| || ||||| || || |||||| | | | | |||| || | |||| Sbjct 357903 TGAAGTGTAGATTCCTTTTGAATATTATAATCGGACAAAGTGCGACCGTCCTCGAGTTGT 357962 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | ||||| | ||| || || ||||||||||| ||||| |||||| Sbjct 357963 TTTCCAGCGAAAATCAATCTCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATTTTA 358022 Query 15094 CTTTTTACAATTTCTATAGTATCGCTAT-TTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 ||| ||| | || || || || | || ||| || || || || ||||| || ||||| Sbjct 358023 GCTTTGACATTCTCAATTGTGTC-CGATGCTTCAACTTCCAATGTGATGGTCTTTCCTGT 358081 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 | ||| || || || || |||||| Sbjct 358082 TAAAGTCTTGACGAAGATCTGCATA 358106 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 ||||| | |||||| |||||| | ||||| | || || || ||| || ||||||||| Sbjct 358813 TCTTCAAGTTGTTTTCCAGCGAAGATCAACCTTTGCTGATCTGGTGGGATACCTTCCTTG 358872 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || |||||| ||| ||| |||| || ||||| | ||||| || || || ||| Sbjct 358873 TCTTGAATTTTCGCTTTGACATTTTCAATTGTATCTGAAGCCTCTACTTCCAAAGTGATG 358932 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || | ||||| |||||||| ||||| Sbjct 358933 GTTTTTCCCGTTAAGGTTTTGACAAAAATCTGCAT 358967 >seq4196 Length=1840941 Score = 95.1 bits (104), Expect = 9e-15 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 14987 CTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15046 |||| || || |||||||| |||| | | | || || | |||||||||||| | | Sbjct 1068772 CTTTCTGGATATTGTAATCTGAGAGAGTGCGTCCATCCTCCAGCTGTTTGCCAGCGAAGA 1068713 Query 15047 TCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTT 15106 | | || || || || ||||||||| ||||| || ||| ||| ||| ||| ||| Sbjct 1068712 TGAGTCGTTGCTGATCCGGTGGAATTCCCTCCTTATCTTGAATCTTGGCTTTGACATTTT 1068653 Query 15107 CTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAA 15166 | || |||||| ||||| || | ||| ||||||||||| || || || || |||| Sbjct 1068652 CAATGGTATCGGAGGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTCACAA 1068593 Query 15167 AAATTTGCAT 15176 | |||||||| Sbjct 1068592 AGATTTGCAT 1068583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357371767703825