Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq4164 131 2e-25 seq4196 93.3 4e-14 >seq4164 Length=697328 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| ||||||| | |||||||| | || || || || |||||||||||||| Sbjct 358968 TCCACCACGTAATCTGAGAACCAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCTGA 359027 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||| ||| || ||||| ||||||||| | ||||| |||||||| || || || Sbjct 359028 CAAGGTGCGTCCATCTTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTGG 359087 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||| ||| ||| || ||| | | |||| || || | | ||| || Sbjct 359088 GATGCCTTCCTTATCCTGGATCTTTGCCTTTACATTCTCGATAGTATCAGAAGCCTCAAC 359147 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 ||||| || | ||||| ||||| | || || || ||||||||||||| Sbjct 359148 TTCGAGAGTTATGGTTTTCCCGGTTAACGTCTTCACGAAAATCTGCATGG 359197 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||||| | || || |||||||| |||||||||||| Sbjct 358107 CCACCACGGAGACGAAGAACCAAATGCAAAGTTGATTCTTTTTGTATATTGTAATCGGAT 358166 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || || || || |||||||| ||| | ||||||| ||| ||||| || || Sbjct 358167 AACGTTCGGCCGTCTTCAAGTTGTTTTCCGGCGAAAATCAATCTCTGTTGATCTGGTGGA 358226 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCG-TACTCTCGAC 127065 || || |||||||| |||||| |||| | ||| | ||||| | | || ||||| Sbjct 358227 ATACCTTCCTTGTCTTGAATTTTCGCTTTGACATTTTCAATTGTGTCTGATGCT-TCGAC 358285 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | |||||| || || || ||| ||||||| |||||||| Sbjct 358286 TTCCAGAGTGATCGTTTTACCAGTGAGTGTTCTTACAAAGATCTGCAT 358333 Score = 111 bits (122), Expect = 1e-19 Identities = 147/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| || ||||||||||| |||||| || |||||| || || || ||||||||| Sbjct 357909 GTAGATTCCTTTTGAATATTATAATCGGACAAAGTGCGACCGTCCTCGAGTTGTTTTCCA 357968 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 ||| | ||||||| ||||||||| ||||| || || || |||||| ||| ||| || || Sbjct 357969 GCGAAAATCAATCTCTGCTGATCAGGAGGAATTCCTTCTTTGTCC-TGAATTTTAGCTTT 358027 Query 127036 GAGTTGTTCGACGGTGTCCG-TACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094 || | || | ||||||| | || || ||||| | || | || || || || | || Sbjct 358028 GACATTCTCAATTGTGTCCGATGCT-TCAACTTCCAATGTGATGGTCTTTCCTGTTAAAG 358086 Query 127095 TTTTTACAAAAATCTGCAT 127113 | || || || |||||||| Sbjct 358087 TCTTGACGAAGATCTGCAT 358105 Score = 102 bits (112), Expect = 8e-17 Identities = 126/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | | ||| |||||||| | || |||||||| ||||||||||| ||| Sbjct 358335 CCACCGCGAAGCCTCAAAACCAAATGCAAGGTCGACTCTTTCTGAATATTGTAGTCGGAG 358394 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || || |||||||| || | || || | ||||||||| ||||| Sbjct 358395 AGTGTGCGACCGTCCTCGAGTTGTTTTCCGGCAAAAATTAACCTCTGCTGATCCGGAGGG 358454 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCG 127055 || || ||||||||| ||| ||| || |||| | ||| | ||||||| Sbjct 358455 ATTCCTTCCTTGTCC-TGAATTTTAGCTTTGACATTTTCAATTGTGTCCG 358503 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || || |||||||||||| ||||||| | |||||||| || || || || ||||| Sbjct 358812 ATCTTCAAGTTGTTTTCCAGCGAAGATCAACCTTTGCTGATCTGGTGGGATACCTTCCTT 358871 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| |||||| |||| | ||| | || || | | ||| ||||| | || | Sbjct 358872 GTCTTGAATTTTCGCTTTGACATTTTCAATTGTATCTGAAGCCTCTACTTCCAAAGTGAT 358931 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || || | ||||| |||||||||||||| Sbjct 358932 GGTTTTTCCCGTTAAGGTTTTGACAAAAATCTGCAT 358967 >seq4196 Length=1840941 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983 |||| || ||||||||||| | ||||| ||| || |||||||| |||||| ||| Sbjct 1068772 CTTTCTGGATATTGTAATCTGAGAGAGTGCGTCCATCCTCCAGCTGTTTGCCAGCGAAGA 1068713 Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGT 127042 | | ||| |||||||| || || || |||||||| | | ||| | | || |||| | | Sbjct 1068712 TGAGTCGTTGCTGATCCGGTGGAATTCCCTCCTTAT-CTTGAATCTTGGCTTTGACATTT 1068654 Query 127043 TCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 127102 || | ||| || | ||| || |||| ||| | ||||| || || || || || ||| Sbjct 1068653 TCAATGGTATCGGAGGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTCACA 1068594 Query 127103 AAAATCTGCATGG 127115 || || ||||||| Sbjct 1068593 AAGATTTGCATGG 1068581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475473191234800