Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq4164 122 8e-23 seq4241 104 2e-17 seq4196 102 7e-17 >seq4164 Length=697328 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || | ||||| |||||||| ||||| ||||| |||||| Sbjct 358104 ATACCACCACGGAGACGAAGAACCAAATGCAAAGTTGATTCTTTTTGTATATTGTAATCG 358163 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | ||||||||| ||| | ||||||| || || || || Sbjct 358164 GATAACGTTCGGCCGTCTTCAAGTTGTTTTCCGGCGAAAATCAATCTCTGTTGATCTGGT 358223 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| || ||||||||||| ||||| ||| | ||||| || | ||| Sbjct 358224 GGAATACCTTCCTTGTCTTGAATTTTCGCTTTGACATTTTCAATTGTGTCTGATGCTTCG 358283 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| | |||||| || || || ||| ||||||| || ||||| Sbjct 358284 ACTTCCAGAGTGATCGTTTTACCAGTGAGTGTTCTTACAAAGATCTGCAT 358333 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 |||| || || |||| | || || || || || ||||||||||| |||||||||||| Sbjct 357877 TTCCGCCTCGAAGCCGAAGTACAAGGTGAAGTGTAGATTCCTTTTGAATATTATAATCGG 357936 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | || | || || | ||||||||| ||| | ||||||| ||||| || || | Sbjct 357937 ACAAAGTGCGACCGTCCTCGAGTTGTTTTCCAGCGAAAATCAATCTCTGCTGATCAGGAG 357996 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 |||| |||||||| || |||||||| ||||| || | ||||| || | || | Sbjct 357997 GAATTCCTTCTTTGTCCTGAATTTTAGCTTTGACATTCTCAATTGTGTCCGATGCTTCAA 358056 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| | || | || || || |||| ||| || || || || ||||| Sbjct 358057 CTTCCAATGTGATGGTCTTTCCTGTTAAAGTCTTGACGAAGATCTGCAT 358105 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| || | ||||||||| ||| | ||||| | |||||| || || || || ||||| || Sbjct 358812 ATCTTCAAGTTGTTTTCCAGCGAAGATCAACCTTTGCTGATCTGGTGGGATACCTTCCTT 358871 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||||||||| ||||| ||| | || || |||| ||| ||||| | ||| | Sbjct 358872 GTCTTGAATTTTCGCTTTGACATTTTCAATTGTATCTGAAGCCTCTACTTCCAAAGTGAT 358931 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || |||| ||||| |||||||| ||||| Sbjct 358932 GGTTTTTCCCGTTAAGGTTTTGACAAAAATCTGCAT 358967 Score = 102 bits (112), Expect = 7e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || | || | || | ||| || || |||||||| || ||||| ||||| Sbjct 358966 ATTCCACCACGTAATCTGAGAACCAAATGGAGAGTGGATTCCTTCTGAATATTGTAATC- 359024 Query 45171 CTGAC--GGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 |||| ||| ||| || | || ||||| ||| | ||||| || |||||||| | Sbjct 359025 -TGACAAGGTGCGTCCATCTTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTG 359083 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | || |||||||| ||||| || || ||| || | || | || || |||| || Sbjct 359084 GTGGGATGCCTTCCTTATCCTGGATCTTTGCCTTTACATTCTCGATAGTATCAGAAGCCT 359143 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||||||||| | ||||| ||||||| || || || ||||| ||||| Sbjct 359144 CAACTTCGAGAGTTATGGTTTTCCCGGTTAACGTCTTCACGAAAATCTGCAT 359195 >seq4241 Length=1709304 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | || |||| || || || ||||||||||| || || |||||| Sbjct 639142 CCTCCACGAAGTCGTAAAACTAAGTGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGAA 639201 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | || |||| ||||| || || | || || || || || || || ||| Sbjct 639202 AGAGTTCTGCCGTCTTCCAGCTGTTTGCCAGCAAAGATTAAACGCTGTTGATCAGGTGGA 639261 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||| ||||| || |||||||| ||||| ||||| ||| || |||| ||| ||| Sbjct 639262 ATGCCCTCTTTGTCCTGAATTTTGGCTTTGACGTTTTCTATGGTATCCGAAGCCTCAACT 639321 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | ||||| || || || || || || || || ||||| Sbjct 639322 TCAAGGGTGATGGTTTTTCCTGTGAGTGTCTTGACGAAGATCTGCAT 639368 Score = 100 bits (110), Expect = 3e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 45213 AATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCT 45272 || || ||||| || || |||||||||||||| |||||||| || ||| | |||| Sbjct 640030 AAACGCTGCTGATCGGGTGGAATGCCTTCTTTGTCTTGAATCTTAGCTTTTACATTTTCT 640089 Query 45273 ACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAA 45332 | ||||| |||| |||||||||||||| | |||||||| || ||||| || ||||| Sbjct 640090 ATAGTGTCTGAAGCTTCGACTTCGAGAGTGATGGTTTTGCCTGTGAGAGTCTTCACAAAG 640149 Query 45333 ATTTGCAT 45340 || ||||| Sbjct 640150 ATCTGCAT 640157 >seq4196 Length=1840941 Score = 102 bits (112), Expect = 7e-17 Identities = 138/191 (72%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 45151 CCTTT-TGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTAT 45209 ||||| |||||||| ||||| || || ||| |||| ||||| || ||| | Sbjct 1068773 CCTTTCTGGATATTGTAATCTGAGAGAGTGCGTCCATCCTCCAGCTGTTTGCCAGCGAAG 1068714 Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 || | ||||||||| ||||| ||||| || || ||||||||||| || ||||| | Sbjct 1068713 ATGAGTCGTTGCTGATCCGGTGGAATTCCCTCCTTATCTTGAATCTTGGCTTTGACATTT 1068654 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 || | ||| ||||| | ||| || ||||| || | ||||| || || || || || ||| Sbjct 1068653 TCAATGGTATCGGAGGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTCACA 1068594 Query 45330 AAAATTTGCAT 45340 || |||||||| Sbjct 1068593 AAGATTTGCAT 1068583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451976955564200