Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq4241 138 3e-27 seq4196 105 2e-17 seq4164 96.9 8e-15 >seq4241 Length=1709304 Score = 138 bits (152), Expect = 3e-27 Identities = 164/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | ||| || | ||||| || || || || |||| ||||||||||| | ||| Sbjct 640164 TCGAAGACGCAGTACTAAATGGAGTGTTGATTCTTTCTGGATGTTGTAGTCAGAAAGAGT 640223 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || |||||||||| ||||||||| || ||||| ||||| ||||| || || ||| || Sbjct 640224 TCTGCCATCTTCCAACTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGGGGAATACC 640283 Query 199528 TTCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 |||| |||||||| ||| || || || ||| | ||||| | | ||| || || | Sbjct 640284 TTCTTTGTCCTGAAT-TTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCCACCTCAA 640342 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || |||||||||||||| ||||| Sbjct 640343 GAGTGATTGTTTTTCCAGTAAGAGTTTTCACAAAGATTTG 640382 Score = 91.5 bits (100), Expect = 3e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| | || | ||| || || || |||||||| | |||||| || | | ||| Sbjct 639148 CGAAGTCGTAAAACTAAGTGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGAAAGAGTT 639207 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || || ||||||||||| || || || ||||| | |||||| || || || ||| || Sbjct 639208 CTGCCGTCTTCCAGCTGTTTGCCAGCAAAGATTAAACGCTGTTGATCAGGTGGAATGCCC 639267 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| |||||||| ||| || || ||| ||| | ||| || | | || || || | Sbjct 639268 TCTTTGTCCTGAAT-TTTGGCTTTGACGTTTTCTATGGTATCCGAAGCCTCAACTTCAAG 639326 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| || || || || || || Sbjct 639327 GGTGATGGTTTTTCCTGTGAGTGTCTTGACGAAGATCTG 639365 >seq4196 Length=1840941 Score = 105 bits (116), Expect = 2e-17 Identities = 137/188 (73%), Gaps = 1/188 (1%) Strand=Plus/Minus Query 199440 CCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| |||| ||||| || | | ||| | |||||| |||||||| || || |||||| Sbjct 1068773 CCTTTCTGGATATTGTAATCTGAGAGAGTGCGTCCATCCTCCAGCTGTTTGCCAGCGAAG 1068714 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558 ||||| || ||||| ||||| |||||| || || |||||||| || || | Sbjct 1068713 ATGAGTCGTTGCTGATCCGGTGGAATTCCCTCCTTATCTTGAATCTTGGCTTTGACATTT 1068654 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618 || | ||| || | | ||||| || | ||||| || ||||||||||| || |||||| Sbjct 1068653 TCAATGGTATCGGAGGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTCACA 1068594 Query 199619 AAAATTTG 199626 || ||||| Sbjct 1068593 AAGATTTG 1068586 >seq4164 Length=697328 Score = 96.9 bits (106), Expect = 8e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | |||||||| || ||||| || | ||||| || | ||| || | ||| Sbjct 358980 TCTGAGAACCAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCTGACAAGGTGCGTCC 359039 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| ||||||||||| ||||| || | |||||||||||| || || ||||| Sbjct 359040 ATCTTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTGGGATGCCTTCCTT 359099 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 ||||| |||||| ||| || |||| || || | | || || || | || || Sbjct 359100 ATCCTGGATCTTTGCCTTTACATTCTCGATAGTATCAGAAGCCTCAACTTCGAGAGTTAT 359159 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || | || ||||| ||||| || Sbjct 359160 GGTTTTCCCGGTTAACGTCTTCACGAAAATCTG 359192 Score = 86.0 bits (94), Expect = 1e-11 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 199432 AGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCC 199491 ||| || || ||||| | ||||| || | || || | || ||||| || || ||||| Sbjct 358136 AGTTGATTCTTTTTGTATATTGTAATCGGATAACGTTCGGCCGTCTTCAAGTTGTTTTCC 358195 Query 199492 GGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-T 199550 |||||| || | | ||| || || || ||| ||||| || ||||| ||| || | Sbjct 358196 GGCGAAAATCAATCTCTGTTGATCTGGTGGAATACCTTCCTTGTCTTGAAT-TTTCGCTT 358254 Query 199551 TCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAG 199610 | || ||| | ||||||| || ||| || |||| |||||||| ||||| ||||| | Sbjct 358255 TGACATTTTCAATTGTGTCTGATGCTTCGACTTCCAGAGTGATCGTTTTACCAGTGAGTG 358314 Query 199611 TTTTCACAAAAATTTG 199626 || | ||||| || || Sbjct 358315 TTCTTACAAAGATCTG 358330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178851437586215