Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4241 125 7e-24 seq4196 125 7e-24 seq4254 82.4 8e-11 >seq4241 Length=1709304 Score = 125 bits (138), Expect = 7e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || ||||| || |||||||||||| | || || ||||| | Sbjct 639369 AATGCAGATCTTCGTCAAGACACTCACAGGAAAAACCATCACCCTTGAAGTTGAGGCTTC 639310 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | ||||| | |||| ||||| | ||||||||||| ||||| | || | Sbjct 639309 GGATACCATAGAAAACG-TCAAAGCCAAAATTCAGGACAAAGAGGGCATTCCACCTGATC 639251 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| | || | || |||||||||||||| |||| | || || ||| |||| Sbjct 639250 AACAGCGTTTAATCTTTGCTGGCAAACAGCTGGAAGACGGCAGAACTCTTTCCGATTACA 639191 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 |||| ||||||||| | || || || || || Sbjct 639190 ACATTCAAAAGGAATCCACACTTCACTTAGT 639160 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| || || || ||||| ||||| | || || || || | Sbjct 640385 ATGCAAATCTTTGTGAAAACTCTTACTGGAAAAACAATCACTCTTGAGGTGGAAGCTTCT 640326 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | |||| ||||| | |||||||| || |||||| | || || Sbjct 640325 GACACAATAGAAAATGTAAAAGCTAAAATTCAGGACAAAGAAGGTATTCCCCCAGATCAG 640266 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || || | || || || ||| |||| || | | || || ||||||||| Sbjct 640265 CAACGTCTGATCTTTGCTGGAAAGCAGTTGGAAGATGGCAGAACTCTTTCTGACTACAAC 640206 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || ||| | || || ||||| || |||||| | |||| || Sbjct 640205 ATCCAGAAAGAATCAACACTCCATTTAGTACTGCGTCTTCGAGGAGG 640159 >seq4196 Length=1840941 Score = 125 bits (138), Expect = 7e-24 Identities = 143/191 (75%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || |||||||| |||||||||||| |||| || |||||| || Sbjct 1068583 ATGCAAATCTTTGTGAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTAGAGGCCTCC 1068642 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| | |||| || || | || || ||||||||||| | || || Sbjct 1068643 GATACCATTGAAAATGTCAAAGCCAAGATTCAAGATAAGGAGGGAATTCCACCGGATCAG 1068702 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | ||| |||||||||||||| || | ||||| ||| || ||||| Sbjct 1068703 CAACGACTCATCTTCGCTGGCAAACAGCTGGAGGATGGACGCACTCTCTCAGATTACAAT 1068762 Query 38424 ATCCA-AAAGG 38433 ||||| ||||| Sbjct 1068763 ATCCAGAAAGG 1068773 >seq4254 Length=3256360 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 132928 GAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAAT 132987 || |||||||| ||||||||||| | ||| ||||||| || ||||| || | ||||||| Sbjct 698382 GAGATGAGTTCATTGCTGAAAGTAAGGCCAGGCATGATTCCTCGTTTCTTCAACCAAAAT 698441 Query 132988 ATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCAC 133040 || || |||||||| || ||| || | || || || || || ||||| || Sbjct 698442 ATCGCAGCGAAACTACCGCTAAAAAAAATACCTTCAACCGCTGCAAAAGCAAC 698494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500143758716800